SMTL ID : 1smv.2 (4 other biounits)

PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-15-mer

Ligands

20 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.144, D.147 Chain B: Y.205, N.265, L.266 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:Y.205, B:L.266, A:D.144, A:D.147 CA.2: 6 residues within 4Å: Chain B: D.144, D.147 Chain C: Y.205, K.206, N.265, L.266 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Metal complexes: C:Y.205, C:L.266, B:D.144, B:D.147 CA.3: 5 residues within 4Å: Chain A: Y.205, N.265, L.266 Chain C: D.144, D.147 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Metal complexes: C:D.144, C:D.147, A:Y.205, A:L.266 CA.4: 1 residues within 4Å: Chain C: K.200 No protein-ligand interaction detected (PLIP) CA.5: 5 residues within 4Å: Chain D: D.144, D.147 Chain E: Y.205, N.265, L.266 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain D Metal complexes: E:Y.205, E:L.266, D:D.144, D:D.147 CA.6: 6 residues within 4Å: Chain E: D.144, D.147 Chain F: Y.205, K.206, N.265, L.266 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Metal complexes: E:D.144, E:D.147, F:Y.205, F:L.266 CA.7: 5 residues within 4Å: Chain D: Y.205, N.265, L.266 Chain F: D.144, D.147 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F Metal complexes: D:Y.205, D:L.266, F:D.144, F:D.147 CA.8: 1 residues within 4Å: Chain F: K.200 No protein-ligand interaction detected (PLIP) CA.9: 5 residues within 4Å: Chain G: D.144, D.147 Chain H: Y.205, N.265, L.266 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain G Metal complexes: H:Y.205, H:L.266, G:D.144, G:D.147 CA.10: 6 residues within 4Å: Chain H: D.144, D.147 Chain I: Y.205, K.206, N.265, L.266 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain I Metal complexes: H:D.144, H:D.147, I:Y.205, I:L.266 CA.11: 5 residues within 4Å: Chain G: Y.205, N.265, L.266 Chain I: D.144, D.147 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain I Metal complexes: G:Y.205, G:L.266, I:D.144, I:D.147 CA.12: 1 residues within 4Å: Chain I: K.200 No protein-ligand interaction detected (PLIP) CA.13: 5 residues within 4Å: Chain J: D.144, D.147 Chain K: Y.205, N.265, L.266 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain K Metal complexes: J:D.144, J:D.147, K:Y.205, K:L.266 CA.14: 6 residues within 4Å: Chain K: D.144, D.147 Chain L: Y.205, K.206, N.265, L.266 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain K Metal complexes: L:Y.205, L:L.266, K:D.144, K:D.147 CA.15: 5 residues within 4Å: Chain J: Y.205, N.265, L.266 Chain L: D.144, D.147 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain J Metal complexes: L:D.144, L:D.147, J:Y.205, J:L.266 CA.16: 1 residues within 4Å: Chain L: K.200 No protein-ligand interaction detected (PLIP) CA.17: 5 residues within 4Å: Chain M: D.144, D.147 Chain N: Y.205, N.265, L.266 4 PLIP interactions: 2 interactions with chain N, 2 interactions with chain M Metal complexes: N:Y.205, N:L.266, M:D.144, M:D.147 CA.18: 6 residues within 4Å: Chain N: D.144, D.147 Chain O: Y.205, K.206, N.265, L.266 4 PLIP interactions: 2 interactions with chain O, 2 interactions with chain N Metal complexes: O:Y.205, O:L.266, N:D.144, N:D.147 CA.19: 5 residues within 4Å: Chain M: Y.205, N.265, L.266 Chain O: D.144, D.147 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain O Metal complexes: M:Y.205, M:L.266, O:D.144, O:D.147 CA.20: 1 residues within 4Å: Chain O: K.200 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhuvaneshwari, M. et al., Structure of sesbania mosaic virus at 3 A resolution. Structure (1995)

Release Date

1995-09-15

Peptides

SESBANIA MOSAIC VIRUS COAT PROTEIN: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

SESBANIA MOSAIC VIRUS COAT PROTEIN

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