- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x FE2: FE (II) ION(Non-covalent)
- 30 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 2 residues within 4Å:- Chain A: D.132, E.135
No protein-ligand interaction detected (PLIP)MG.7: 1 residues within 4Å:- Chain B: D.34
No protein-ligand interaction detected (PLIP)MG.11: 2 residues within 4Å:- Chain C: D.132
- Chain E: D.34
No protein-ligand interaction detected (PLIP)MG.15: 2 residues within 4Å:- Chain D: E.81, E.85
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.85, D:E.85, H2O.4
MG.16: 1 residues within 4Å:- Chain D: D.34
No protein-ligand interaction detected (PLIP)MG.17: 4 residues within 4Å:- Chain D: D.132
- Chain K: D.34
- Chain L: M.1, F.64
No protein-ligand interaction detected (PLIP)MG.24: 1 residues within 4Å:- Chain F: E.135
No protein-ligand interaction detected (PLIP)MG.25: 2 residues within 4Å:- Chain F: D.34
- Chain G: D.132
No protein-ligand interaction detected (PLIP)MG.28: 2 residues within 4Å:- Chain G: E.81, E.85
2 PLIP interactions:1 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:E.85, H2O.8
MG.32: 2 residues within 4Å:- Chain G: D.34
- Chain P: D.132
No protein-ligand interaction detected (PLIP)MG.35: 2 residues within 4Å:- Chain I: D.132, E.135
No protein-ligand interaction detected (PLIP)MG.39: 1 residues within 4Å:- Chain J: D.34
No protein-ligand interaction detected (PLIP)MG.43: 2 residues within 4Å:- Chain K: D.132
- Chain M: D.34
No protein-ligand interaction detected (PLIP)MG.47: 2 residues within 4Å:- Chain L: E.81, E.85
3 PLIP interactions:2 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:E.85, L:E.85, H2O.12
MG.48: 1 residues within 4Å:- Chain L: D.34
No protein-ligand interaction detected (PLIP)MG.49: 4 residues within 4Å:- Chain L: D.132
- Chain S: D.34
- Chain T: M.1, F.64
No protein-ligand interaction detected (PLIP)MG.56: 1 residues within 4Å:- Chain N: E.135
No protein-ligand interaction detected (PLIP)MG.57: 2 residues within 4Å:- Chain N: D.34
- Chain O: D.132
No protein-ligand interaction detected (PLIP)MG.60: 2 residues within 4Å:- Chain O: E.81, E.85
2 PLIP interactions:1 interactions with chain O, 1 Ligand-Water interactions- Metal complexes: O:E.85, H2O.16
MG.64: 2 residues within 4Å:- Chain O: D.34
- Chain X: D.132
No protein-ligand interaction detected (PLIP)MG.67: 2 residues within 4Å:- Chain Q: D.132, E.135
No protein-ligand interaction detected (PLIP)MG.71: 1 residues within 4Å:- Chain R: D.34
No protein-ligand interaction detected (PLIP)MG.75: 2 residues within 4Å:- Chain S: D.132
- Chain U: D.34
No protein-ligand interaction detected (PLIP)MG.79: 2 residues within 4Å:- Chain T: E.81, E.85
3 PLIP interactions:2 interactions with chain T, 1 Ligand-Water interactions- Metal complexes: T:E.85, T:E.85, H2O.21
MG.80: 1 residues within 4Å:- Chain T: D.34
No protein-ligand interaction detected (PLIP)MG.81: 4 residues within 4Å:- Chain C: D.34
- Chain D: M.1, F.64
- Chain T: D.132
No protein-ligand interaction detected (PLIP)MG.88: 1 residues within 4Å:- Chain V: E.135
No protein-ligand interaction detected (PLIP)MG.89: 2 residues within 4Å:- Chain V: D.34
- Chain W: D.132
No protein-ligand interaction detected (PLIP)MG.92: 2 residues within 4Å:- Chain W: E.81, E.85
2 PLIP interactions:1 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: W:E.85, H2O.24
MG.96: 2 residues within 4Å:- Chain H: D.132
- Chain W: D.34
No protein-ligand interaction detected (PLIP)- 6 x BA: BARIUM ION(Non-covalent)
BA.4: 8 residues within 4Å:- Chain A: N.148, Q.151
- Chain F: N.148, Q.151
- Chain G: N.148, Q.151
- Chain P: N.148, Q.151
No protein-ligand interaction detected (PLIP)BA.18: 8 residues within 4Å:- Chain B: N.148, Q.151
- Chain D: N.148, Q.151
- Chain K: N.148, Q.151
- Chain M: N.148, Q.151
No protein-ligand interaction detected (PLIP)BA.36: 8 residues within 4Å:- Chain I: N.148, Q.151
- Chain N: N.148, Q.151
- Chain O: N.148, Q.151
- Chain X: N.148, Q.151
No protein-ligand interaction detected (PLIP)BA.50: 8 residues within 4Å:- Chain J: N.148, Q.151
- Chain L: N.148, Q.151
- Chain S: N.148, Q.151
- Chain U: N.148, Q.151
No protein-ligand interaction detected (PLIP)BA.68: 8 residues within 4Å:- Chain H: N.148, Q.151
- Chain Q: N.148, Q.151
- Chain V: N.148, Q.151
- Chain W: N.148, Q.151
No protein-ligand interaction detected (PLIP)BA.82: 8 residues within 4Å:- Chain C: N.148, Q.151
- Chain E: N.148, Q.151
- Chain R: N.148, Q.151
- Chain T: N.148, Q.151
No protein-ligand interaction detected (PLIP)- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.8: 18 residues within 4Å:- Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56
- Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
19 PLIP interactions:11 interactions with chain B, 8 interactions with chain A,- Hydrophobic interactions: B:L.19, B:I.22, B:I.22, B:F.26, B:F.26, B:F.26, B:F.26, B:I.49, B:I.49, B:M.52, A:L.19, A:F.26, A:F.26, A:F.26, A:I.49, A:M.52, A:A.55
- Salt bridges: B:K.53, A:K.53
HEM.12: 16 residues within 4Å:- Chain C: I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56
- Chain D: L.19, I.22, N.23, F.26, Y.45, M.52, K.53
12 PLIP interactions:6 interactions with chain C, 6 interactions with chain D,- Hydrophobic interactions: C:I.22, C:F.26, C:I.49, C:M.52, C:A.55, D:L.19, D:I.22, D:F.26, D:F.26, D:M.52
- Salt bridges: C:K.53, D:K.53
HEM.21: 13 residues within 4Å:- Chain E: I.22, N.23, F.26, Y.45, M.52, K.53, I.59
- Chain F: I.22, N.23, F.26, Y.45, M.52, K.53
10 PLIP interactions:5 interactions with chain E, 5 interactions with chain F,- Hydrophobic interactions: E:I.22, E:F.26, E:M.52, E:I.59, F:I.22, F:I.22, F:F.26, F:M.52
- Salt bridges: E:K.53, F:K.53
HEM.29: 18 residues within 4Å:- Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56, I.59
- Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
15 PLIP interactions:7 interactions with chain G, 8 interactions with chain H,- Hydrophobic interactions: G:L.19, G:F.26, G:I.49, G:M.52, G:A.55, G:I.59, H:L.19, H:I.22, H:I.22, H:F.26, H:F.26, H:I.49, H:M.52
- Salt bridges: G:K.53, H:K.53
HEM.40: 18 residues within 4Å:- Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56
- Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
19 PLIP interactions:8 interactions with chain I, 11 interactions with chain J,- Hydrophobic interactions: I:L.19, I:F.26, I:F.26, I:F.26, I:I.49, I:M.52, I:A.55, J:L.19, J:I.22, J:I.22, J:F.26, J:F.26, J:F.26, J:F.26, J:I.49, J:I.49, J:M.52
- Salt bridges: I:K.53, J:K.53
HEM.44: 16 residues within 4Å:- Chain K: I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56
- Chain L: L.19, I.22, N.23, F.26, Y.45, M.52, K.53
12 PLIP interactions:6 interactions with chain L, 6 interactions with chain K,- Hydrophobic interactions: L:L.19, L:I.22, L:F.26, L:F.26, L:M.52, K:I.22, K:F.26, K:I.49, K:M.52, K:A.55
- Salt bridges: L:K.53, K:K.53
HEM.53: 13 residues within 4Å:- Chain M: I.22, N.23, F.26, Y.45, M.52, K.53, I.59
- Chain N: I.22, N.23, F.26, Y.45, M.52, K.53
10 PLIP interactions:5 interactions with chain N, 5 interactions with chain M,- Hydrophobic interactions: N:I.22, N:I.22, N:F.26, N:M.52, M:I.22, M:F.26, M:M.52, M:I.59
- Salt bridges: N:K.53, M:K.53
HEM.61: 18 residues within 4Å:- Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56, I.59
- Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
15 PLIP interactions:7 interactions with chain O, 8 interactions with chain P,- Hydrophobic interactions: O:L.19, O:F.26, O:I.49, O:M.52, O:A.55, O:I.59, P:L.19, P:I.22, P:I.22, P:F.26, P:F.26, P:I.49, P:M.52
- Salt bridges: O:K.53, P:K.53
HEM.72: 18 residues within 4Å:- Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56
- Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
19 PLIP interactions:11 interactions with chain R, 8 interactions with chain Q,- Hydrophobic interactions: R:L.19, R:I.22, R:I.22, R:F.26, R:F.26, R:F.26, R:F.26, R:I.49, R:I.49, R:M.52, Q:L.19, Q:F.26, Q:F.26, Q:F.26, Q:I.49, Q:M.52, Q:A.55
- Salt bridges: R:K.53, Q:K.53
HEM.76: 16 residues within 4Å:- Chain S: I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56
- Chain T: L.19, I.22, N.23, F.26, Y.45, M.52, K.53
12 PLIP interactions:6 interactions with chain S, 6 interactions with chain T,- Hydrophobic interactions: S:I.22, S:F.26, S:I.49, S:M.52, S:A.55, T:L.19, T:I.22, T:F.26, T:F.26, T:M.52
- Salt bridges: S:K.53, T:K.53
HEM.85: 13 residues within 4Å:- Chain U: I.22, N.23, F.26, Y.45, M.52, K.53, I.59
- Chain V: I.22, N.23, F.26, Y.45, M.52, K.53
10 PLIP interactions:5 interactions with chain U, 5 interactions with chain V,- Hydrophobic interactions: U:I.22, U:F.26, U:M.52, U:I.59, V:I.22, V:I.22, V:F.26, V:M.52
- Salt bridges: U:K.53, V:K.53
HEM.93: 18 residues within 4Å:- Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56, I.59
- Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
15 PLIP interactions:7 interactions with chain W, 8 interactions with chain X,- Hydrophobic interactions: W:L.19, W:F.26, W:I.49, W:M.52, W:A.55, W:I.59, X:L.19, X:I.22, X:I.22, X:F.26, X:F.26, X:I.49, X:M.52
- Salt bridges: W:K.53, X:K.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, H.L. et al., 2.6 A resolution crystal structure of the bacterioferritin from Azotobacter vinelandii. Febs Lett. (2004)
- Release Date
- 2005-04-05
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
HQ
AR
BS
CT
DU
EV
FW
GX
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x FE2: FE (II) ION(Non-covalent)
- 30 x MG: MAGNESIUM ION(Non-covalent)
- 6 x BA: BARIUM ION(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, H.L. et al., 2.6 A resolution crystal structure of the bacterioferritin from Azotobacter vinelandii. Febs Lett. (2004)
- Release Date
- 2005-04-05
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
HQ
AR
BS
CT
DU
EV
FW
GX
H