SMTL ID : 1sqo.1

Substituted 2-Naphthamidine Inhibitors of Urokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.53 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.53 SO4.2: 5 residues within 4Å: Chain A: H.46, Q.195, G.196, S.198 Ligands: UI2.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.195, A:G.196, A:S.198, A:S.198 Salt bridges: A:H.46 SO4.3: 3 residues within 4Å: Chain A: Y.126, R.233, H.236 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.233, A:H.236

1 x UI2: 8-(PYRIMIDIN-2-YLAMINO)NAPHTHALENE-2-CARBOXIMIDAMIDE(Non-covalent)

UI2.4: 13 residues within 4Å: Chain A: S.145, D.192, S.193, C.194, Q.195, S.198, V.216, W.218, G.219, G.221, C.222, G.229 Ligands: SO4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Q.195, A:V.216 Hydrogen bonds: A:S.193, A:S.193, A:Q.195, A:G.219, A:G.221, A:G.221 Water bridges: A:A.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wendt, M.D. et al., Interaction with the S1beta-pocket of urokinase: 8-heterocycle substituted and 6,8-disubstituted 2-naphthamidine urokinase inhibitors. Bioorg.Med.Chem.Lett. (2004)

Release Date

2004-04-27

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase-type plasminogen activator

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