SMTL ID : 1sqy.1

Structure of human diferric lactoferrin at 2.5A resolution using crystals grown at pH 6.5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.478 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain A: N.137 No protein-ligand interaction detected (PLIP)

2 x FE: FE (III) ION(Non-covalent)

FE.3: 5 residues within 4Å: Chain A: D.395, Y.435, Y.528, H.597 Ligands: CO3.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.395, A:Y.435, A:Y.528, A:H.597 FE.4: 5 residues within 4Å: Chain A: D.60, Y.92, Y.192, H.253 Ligands: CO3.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.60, A:Y.92, A:Y.192, A:H.253

2 x CO3: CARBONATE ION(Non-functional Binders)

CO3.5: 10 residues within 4Å: Chain A: D.60, Y.92, T.117, R.121, T.122, A.123, G.124, Y.192, H.253 Ligands: FE.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.121 CO3.6: 10 residues within 4Å: Chain A: D.395, Y.435, T.461, R.465, T.466, A.467, G.468, Y.528, H.597 Ligands: FE.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.461, A:A.467

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vikram, P. et al., Structure of human diferric lactoferrin at 2.5A resolution using crystals grown at pH 6.5. To be Published

Release Date

2004-04-13

Peptides

lactoferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

lactoferrin