SMTL ID : 1svd.4 (3 other biounits)

The structure of Halothiobacillus neapolitanus RuBisCo

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.288, H.320, S.372 8 PLIP interactions: 8 interactions with chain A Water bridges: A:H.287, A:R.288, A:R.288, A:H.320, A:G.322, A:G.322 Salt bridges: A:R.288, A:H.320 SO4.2: 4 residues within 4Å: Chain A: G.373, G.374, G.396, G.397 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.374, A:G.396, A:G.397 Water bridges: A:G.373, A:I.375, A:G.398, A:G.398 SO4.4: 3 residues within 4Å: Chain C: R.288, H.320, S.372 8 PLIP interactions: 8 interactions with chain C Water bridges: C:H.287, C:R.288, C:R.288, C:H.320, C:G.322, C:G.322 Salt bridges: C:R.288, C:H.320 SO4.5: 4 residues within 4Å: Chain C: G.373, G.374, G.396, G.397 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.374, C:G.396, C:G.397 Water bridges: C:G.373, C:I.375, C:G.398, C:G.398

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: N.156 Chain B: Y.13, E.14, S.51, W.56, K.89 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.156, B:S.51, B:K.89 Water bridges: A:N.156, B:S.51, B:K.89 GOL.6: 6 residues within 4Å: Chain C: N.156 Chain D: Y.13, E.14, S.51, W.56, K.89 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:S.51, D:K.89, C:N.156 Water bridges: D:S.51, D:K.89, C:N.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerfeld, C.A. et al., The structure of Halothiobacillus neapolitanus RuBisCo. To be Published

Release Date

2005-04-12

Peptides

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit: AC
Ribulose bisphosphate carboxylase small chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
M

D
M

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

Ribulose bisphosphate carboxylase small chain

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