SMTL ID : 1sx3.1

GroEL14-(ATPgammaS)14

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-14-mer

Ligands

14 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.86 Ligands: AGS.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.86, H2O.1, H2O.1 MG.4: 2 residues within 4Å: Chain B: D.86 Ligands: AGS.6 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.86, H2O.3, H2O.3 MG.7: 2 residues within 4Å: Chain C: D.86 Ligands: AGS.9 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.86, H2O.6, H2O.6 MG.11: 2 residues within 4Å: Chain D: D.86 Ligands: AGS.13 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.86, H2O.8, H2O.8 MG.15: 2 residues within 4Å: Chain E: D.86 Ligands: AGS.17 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.86, H2O.12, H2O.12 MG.18: 2 residues within 4Å: Chain F: D.86 Ligands: AGS.20 3 PLIP interactions: 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.86, H2O.15, H2O.15 MG.21: 2 residues within 4Å: Chain G: D.86 Ligands: AGS.23 3 PLIP interactions: 1 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.86, H2O.18, H2O.18 MG.24: 2 residues within 4Å: Chain H: D.86 Ligands: AGS.26 3 PLIP interactions: 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.86, H2O.21, H2O.21 MG.27: 2 residues within 4Å: Chain I: D.86 Ligands: AGS.29 3 PLIP interactions: 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:D.86, H2O.24, H2O.24 MG.30: 2 residues within 4Å: Chain J: D.86 Ligands: AGS.32 3 PLIP interactions: 1 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:D.86, H2O.27, H2O.27 MG.33: 2 residues within 4Å: Chain K: D.86 Ligands: AGS.35 3 PLIP interactions: 1 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:D.86, H2O.28, H2O.28 MG.36: 2 residues within 4Å: Chain L: D.86 Ligands: AGS.38 3 PLIP interactions: 1 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:D.86, H2O.30, H2O.30 MG.39: 2 residues within 4Å: Chain M: D.86 Ligands: AGS.41 3 PLIP interactions: 1 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:D.86, H2O.33, H2O.33 MG.42: 2 residues within 4Å: Chain N: D.86 Ligands: AGS.44 3 PLIP interactions: 1 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:D.86, H2O.35, H2O.35

16 x K: POTASSIUM ION(Non-covalent)

K.2: 3 residues within 4Å: Chain A: T.29, K.50 Ligands: AGS.3 Ligand excluded by PLIP K.5: 3 residues within 4Å: Chain B: T.29, K.50 Ligands: AGS.6 Ligand excluded by PLIP K.8: 3 residues within 4Å: Chain C: T.29, K.50 Ligands: AGS.9 Ligand excluded by PLIP K.10: 3 residues within 4Å: Chain D: K.131, A.132, S.134 Ligand excluded by PLIP K.12: 3 residues within 4Å: Chain D: T.29, K.50 Ligands: AGS.13 Ligand excluded by PLIP K.14: 3 residues within 4Å: Chain E: K.131, A.132, S.134 Ligand excluded by PLIP K.16: 3 residues within 4Å: Chain E: T.29, K.50 Ligands: AGS.17 Ligand excluded by PLIP K.19: 3 residues within 4Å: Chain F: T.29, K.50 Ligands: AGS.20 Ligand excluded by PLIP K.22: 3 residues within 4Å: Chain G: T.29, K.50 Ligands: AGS.23 Ligand excluded by PLIP K.25: 3 residues within 4Å: Chain H: T.29, K.50 Ligands: AGS.26 Ligand excluded by PLIP K.28: 3 residues within 4Å: Chain I: T.29, K.50 Ligands: AGS.29 Ligand excluded by PLIP K.31: 3 residues within 4Å: Chain J: T.29, K.50 Ligands: AGS.32 Ligand excluded by PLIP K.34: 3 residues within 4Å: Chain K: T.29, K.50 Ligands: AGS.35 Ligand excluded by PLIP K.37: 3 residues within 4Å: Chain L: T.29, K.50 Ligands: AGS.38 Ligand excluded by PLIP K.40: 3 residues within 4Å: Chain M: T.29, K.50 Ligands: AGS.41 Ligand excluded by PLIP K.43: 3 residues within 4Å: Chain N: T.29, K.50 Ligands: AGS.44 Ligand excluded by PLIP

14 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 21 residues within 4Å: Chain A: T.29, L.30, G.31, P.32, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, G.415, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.1, K.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.31, A:D.86, A:G.87, A:T.88, A:T.89, A:T.89, A:T.90, A:T.90, A:G.414, A:G.415, A:N.478, A:A.479, A:A.480, A:D.494 Water bridges: A:D.51, A:T.90 AGS.6: 21 residues within 4Å: Chain B: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.4, K.5 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:G.31, B:D.86, B:G.87, B:G.87, B:T.88, B:T.89, B:T.89, B:T.90, B:T.90, B:G.414, B:N.478, B:A.479, B:A.480, B:D.494 Water bridges: B:G.52, B:G.52, B:G.52, B:T.90, B:T.90 AGS.9: 21 residues within 4Å: Chain C: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.7, K.8 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:G.31, C:D.86, C:G.87, C:G.87, C:T.88, C:T.89, C:T.89, C:T.90, C:G.414, C:N.478, C:A.479, C:A.480, C:D.494 Water bridges: C:D.51, C:D.51 AGS.13: 20 residues within 4Å: Chain D: T.29, L.30, G.31, P.32, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.11, K.12 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:G.31, D:D.86, D:G.87, D:G.87, D:T.88, D:T.89, D:T.89, D:T.90, D:G.414, D:N.478, D:A.479, D:A.480, D:D.494 Water bridges: D:T.90, D:T.90, D:T.90 AGS.17: 21 residues within 4Å: Chain E: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.15, K.16 18 PLIP interactions: 18 interactions with chain E Hydrogen bonds: E:G.31, E:G.87, E:G.87, E:T.88, E:T.89, E:T.89, E:T.90, E:T.90, E:G.414, E:N.478, E:A.479, E:A.480, E:D.494 Water bridges: E:G.52, E:G.52, E:T.90, E:T.90, E:D.494 AGS.20: 21 residues within 4Å: Chain F: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.18, K.19 19 PLIP interactions: 19 interactions with chain F Hydrogen bonds: F:G.31, F:D.86, F:G.87, F:G.87, F:T.88, F:T.89, F:T.89, F:T.90, F:G.414, F:N.478, F:A.479, F:A.480, F:D.494 Water bridges: F:D.51, F:G.52, F:G.52, F:T.90, F:T.90, F:T.90 AGS.23: 22 residues within 4Å: Chain G: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, I.453, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.21, K.22 18 PLIP interactions: 18 interactions with chain G Hydrogen bonds: G:G.31, G:D.86, G:G.87, G:G.87, G:T.88, G:T.89, G:T.89, G:T.90, G:T.90, G:G.414, G:N.478, G:A.479, G:A.480, G:D.494 Water bridges: G:D.51, G:T.90, G:T.90, G:D.494 AGS.26: 21 residues within 4Å: Chain H: T.29, L.30, G.31, P.32, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, I.453, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.24, K.25 20 PLIP interactions: 20 interactions with chain H Hydrogen bonds: H:G.31, H:G.87, H:G.87, H:T.88, H:T.89, H:T.89, H:T.90, H:T.90, H:G.414, H:N.478, H:A.479, H:A.480, H:D.494 Water bridges: H:T.29, H:G.52, H:D.86, H:D.86, H:T.90, H:T.90, H:D.494 AGS.29: 21 residues within 4Å: Chain I: T.29, L.30, G.31, P.32, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, I.453, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.27, K.28 18 PLIP interactions: 18 interactions with chain I Hydrogen bonds: I:G.31, I:G.87, I:G.87, I:T.88, I:T.89, I:T.89, I:T.90, I:T.90, I:G.414, I:N.478, I:A.479, I:A.480, I:D.494 Water bridges: I:D.51, I:D.86, I:T.90, I:G.415, I:D.494 AGS.32: 20 residues within 4Å: Chain J: T.29, L.30, G.31, P.32, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.30, K.31 15 PLIP interactions: 15 interactions with chain J Hydrogen bonds: J:G.31, J:G.87, J:G.87, J:T.88, J:T.89, J:T.90, J:G.414, J:G.415, J:N.478, J:A.479, J:A.480, J:D.494 Water bridges: J:T.89, J:T.90, J:T.90 AGS.35: 21 residues within 4Å: Chain K: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.33, K.34 14 PLIP interactions: 14 interactions with chain K Hydrogen bonds: K:G.31, K:G.87, K:T.88, K:T.89, K:T.89, K:T.90, K:G.414, K:G.415, K:N.478, K:A.479, K:A.480, K:D.494 Water bridges: K:T.90, K:T.90 AGS.38: 21 residues within 4Å: Chain L: T.29, L.30, G.31, P.32, G.52, V.53, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.36, K.37 14 PLIP interactions: 14 interactions with chain L Hydrogen bonds: L:G.31, L:G.87, L:G.87, L:T.88, L:T.89, L:T.89, L:T.90, L:G.414, L:N.478, L:A.479, L:A.480, L:D.494 Water bridges: L:T.90, L:T.90 AGS.41: 21 residues within 4Å: Chain M: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.39, K.40 14 PLIP interactions: 14 interactions with chain M Hydrogen bonds: M:G.31, M:G.87, M:G.87, M:T.88, M:T.89, M:T.89, M:T.90, M:G.414, M:G.415, M:N.478, M:A.479, M:A.480, M:D.494 Water bridges: M:D.86 AGS.44: 21 residues within 4Å: Chain N: T.29, L.30, G.31, P.32, D.51, G.52, D.86, G.87, T.88, T.89, T.90, G.413, G.414, Y.477, N.478, A.479, A.480, I.492, D.494 Ligands: MG.42, K.43 15 PLIP interactions: 15 interactions with chain N Hydrogen bonds: N:G.31, N:G.87, N:G.87, N:T.88, N:T.89, N:T.89, N:T.90, N:G.414, N:N.478, N:A.479, N:A.480, N:D.494 Water bridges: N:G.52, N:T.90, N:T.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaudhry, C. et al., Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states. J.Mol.Biol. (2004)

Release Date

2005-03-01

Peptides

groEL protein: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

groEL protein