SMTL ID : 1sx8.1

EcoRV bound to cognate DNA and Mn2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: T.6, A.7 Chain C: D.73, D.89 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.73, C:D.73, C:D.89, H2O.2 MN.2: 2 residues within 4Å: Chain C: E.44, D.73 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.73, H2O.2 MN.3: 1 residues within 4Å: Chain C: H.70 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.70 MN.4: 2 residues within 4Å: Chain A: T.11 Chain D: H.70 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.70 MN.5: 5 residues within 4Å: Chain B: T.6, A.7 Chain D: D.73, D.89, I.90 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.73, D:D.89, D:D.89, H2O.5, H2O.5 MN.6: 2 residues within 4Å: Chain D: E.44, D.73 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.44, D:D.73, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horton, N.C. et al., DNA Cleavage by EcoRV Endonuclease: Two Metal Ions in Three Metal Ion Binding Sites. Biochemistry (2004)

Release Date

2004-04-06

Peptides

Type II restriction enzyme EcoRV: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Type II restriction enzyme EcoRV

Related Entries With Identical Sequence