- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HDD: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.2: 27 residues within 4Å:- Chain A: R.68, V.69, V.70, H.71, R.108, G.127, F.128, A.129, V.142, G.143, N.144, F.149, A.154, F.157, V.217, N.218, F.334, L.350, R.354, S.357, Y.358, T.361, Q.362, R.365
- Chain C: I.57, D.61
- Ligands: HDD.1
32 PLIP interactions:31 interactions with chain A, 1 interactions with chain C,- Hydrophobic interactions: A:V.69, A:H.71, A:A.129, A:V.142, A:N.144, A:F.149, A:A.154, A:F.157, A:F.157, A:F.157, A:F.157, A:V.217, A:V.217, A:F.334, A:L.350, A:L.350, A:R.354, A:T.361, C:I.57
- Hydrogen bonds: A:Q.362
- Water bridges: A:V.69, A:I.332, A:T.361, A:R.365
- Salt bridges: A:R.68, A:R.68, A:R.108, A:R.365
- pi-Stacking: A:H.71, A:F.157
- pi-Cation interactions: A:R.354
- Metal complexes: A:Y.358
HEM.4: 27 residues within 4Å:- Chain B: R.68, V.69, V.70, H.71, R.108, G.127, F.128, A.129, V.142, G.143, N.144, F.149, A.154, F.157, V.217, N.218, F.334, L.350, R.354, S.357, Y.358, T.361, Q.362, R.365
- Chain D: I.57, D.61
- Ligands: HDD.3
32 PLIP interactions:31 interactions with chain B, 1 interactions with chain D,- Hydrophobic interactions: B:V.69, B:H.71, B:A.129, B:V.142, B:N.144, B:F.149, B:A.154, B:F.157, B:F.157, B:F.157, B:F.157, B:V.217, B:V.217, B:F.334, B:L.350, B:L.350, B:R.354, B:T.361, D:I.57
- Hydrogen bonds: B:Q.362
- Water bridges: B:E.67, B:V.69, B:I.332, B:R.365
- Salt bridges: B:R.68, B:R.68, B:R.108, B:R.365
- pi-Stacking: B:H.71, B:F.157
- pi-Cation interactions: B:R.354
- Metal complexes: B:Y.358
HEM.6: 27 residues within 4Å:- Chain A: I.57, D.61
- Chain C: R.68, V.69, V.70, H.71, R.108, G.127, F.128, A.129, V.142, G.143, N.144, F.149, A.154, F.157, V.217, N.218, F.334, L.350, R.354, S.357, Y.358, T.361, Q.362, R.365
- Ligands: HDD.5
32 PLIP interactions:31 interactions with chain C, 1 interactions with chain A,- Hydrophobic interactions: C:V.69, C:H.71, C:A.129, C:V.142, C:N.144, C:F.149, C:A.154, C:F.157, C:F.157, C:F.157, C:F.157, C:V.217, C:V.217, C:F.334, C:L.350, C:L.350, C:R.354, C:T.361, A:I.57
- Hydrogen bonds: C:Q.362
- Water bridges: C:V.69, C:I.332, C:T.361, C:R.365
- Salt bridges: C:R.68, C:R.68, C:R.108, C:R.365
- pi-Stacking: C:H.71, C:F.157
- pi-Cation interactions: C:R.354
- Metal complexes: C:Y.358
HEM.8: 27 residues within 4Å:- Chain B: I.57, D.61
- Chain D: R.68, V.69, V.70, H.71, R.108, G.127, F.128, A.129, V.142, G.143, N.144, F.149, A.154, F.157, V.217, N.218, F.334, L.350, R.354, S.357, Y.358, T.361, Q.362, R.365
- Ligands: HDD.7
32 PLIP interactions:31 interactions with chain D, 1 interactions with chain B,- Hydrophobic interactions: D:V.69, D:H.71, D:A.129, D:V.142, D:N.144, D:F.149, D:A.154, D:F.157, D:F.157, D:F.157, D:F.157, D:V.217, D:V.217, D:F.334, D:L.350, D:L.350, D:R.354, D:T.361, B:I.57
- Hydrogen bonds: D:Q.362
- Water bridges: D:E.67, D:V.69, D:I.332, D:R.365
- Salt bridges: D:R.68, D:R.68, D:R.108, D:R.365
- pi-Stacking: D:H.71, D:F.157
- pi-Cation interactions: D:R.354
- Metal complexes: D:Y.358
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diaz, A. et al., Unusual Cys-Tyr covalent bond in a large catalase. J.Mol.Biol. (2004)
- Release Date
- 2004-10-12
- Peptides
- Catalase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HDD: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diaz, A. et al., Unusual Cys-Tyr covalent bond in a large catalase. J.Mol.Biol. (2004)
- Release Date
- 2004-10-12
- Peptides
- Catalase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B