- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.52 Å
- Oligo State
- homo-tetramer
- Ligands
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 8 residues within 4Å:- Chain A: D.45, A.47, G.48, G.49, H.57
- Chain B: T.76, V.80, L.81
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.47, A:G.49, A:H.57
EDO.5: 5 residues within 4Å:- Chain A: Q.69, K.72, L.73, P.85
- Chain B: D.28
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.69
- Water bridges: A:K.72, A:K.72
EDO.6: 1 residues within 4Å:- Chain A: Q.9
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.9
EDO.12: 8 residues within 4Å:- Chain A: T.76, V.80, L.81
- Chain B: D.45, A.47, G.48, G.49, H.57
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.47, B:G.49, B:H.57
EDO.13: 5 residues within 4Å:- Chain B: I.22, H.23, P.24, A.378, R.381
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.23, B:R.381
- Water bridges: B:I.22
EDO.14: 8 residues within 4Å:- Chain B: G.164, H.165, V.166, Y.167
- Chain D: G.164, H.165, V.166, Y.167
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:H.165, B:V.166, B:Y.167, D:H.165
- Water bridges: D:V.166
EDO.19: 8 residues within 4Å:- Chain A: G.164, H.165, V.166, Y.167
- Chain C: G.164, H.165, V.166, Y.167
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain C- Water bridges: A:Y.167, C:P.163
- Hydrogen bonds: C:H.165, C:Y.167
EDO.20: 10 residues within 4Å:- Chain C: D.45, A.47, G.48, G.49, L.53, H.57
- Chain D: H.75, T.76, V.80, L.81
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.49, C:H.57
EDO.21: 6 residues within 4Å:- Chain C: Q.69, K.72, L.73, P.85
- Chain D: A.27, D.28
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:Q.69, C:K.72, C:K.72, D:A.27
EDO.28: 8 residues within 4Å:- Chain C: T.76, V.80, L.81
- Chain D: D.45, A.47, G.48, G.49, H.57
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:A.47, D:A.47, D:G.49, D:H.57
EDO.29: 8 residues within 4Å:- Chain C: P.275, N.301, I.303, A.304
- Chain D: F.274, P.275, N.301, I.303
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:N.301, C:N.301, C:A.304
EDO.30: 5 residues within 4Å:- Chain D: I.22, H.23, P.24, A.378, R.381
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:H.23, D:R.381
- Water bridges: D:I.22
EDO.31: 8 residues within 4Å:- Chain B: V.166, Y.167, R.168, D.194
- Chain D: V.166, Y.167, R.168, D.194
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:R.168, D:D.194, B:D.194
- Water bridges: D:D.194
- 4 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PMP.7: 14 residues within 4Å:- Chain A: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Chain B: G.296, T.297
- Ligands: SO4.3
19 PLIP interactions:14 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:Y.138, A:E.206, A:V.241
- Hydrogen bonds: A:T.110, A:T.110, A:G.111, A:S.112, A:Y.138, A:Q.242, A:K.268, B:T.297, B:T.297, B:T.297, B:T.297
- Water bridges: A:S.112, A:Y.138, A:E.206, B:Y.298
- Salt bridges: A:K.268
PMP.15: 14 residues within 4Å:- Chain A: G.296, T.297
- Chain B: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Ligands: SO4.11
20 PLIP interactions:15 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:E.206, B:V.241
- Hydrogen bonds: B:T.110, B:G.111, B:S.112, B:Y.138, B:Q.242, B:K.268, A:T.297, A:T.297, A:T.297
- Water bridges: B:S.112, B:S.112, B:S.112, B:Y.138, B:R.141, B:E.206, A:T.297, A:Y.298
- pi-Stacking: B:Y.138
PMP.22: 14 residues within 4Å:- Chain C: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Chain D: G.296, T.297
- Ligands: SO4.18
16 PLIP interactions:11 interactions with chain C, 5 interactions with chain D- Hydrophobic interactions: C:E.206, C:V.241
- Hydrogen bonds: C:T.110, C:G.111, C:S.112, C:Q.242, C:K.268, D:T.297, D:T.297, D:T.297, D:T.297
- Water bridges: C:S.112, C:R.141, C:E.206, D:A.299
- pi-Stacking: C:Y.138
PMP.32: 14 residues within 4Å:- Chain C: G.296, T.297
- Chain D: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Ligands: SO4.27
18 PLIP interactions:13 interactions with chain D, 5 interactions with chain C- Hydrophobic interactions: D:E.206, D:V.241
- Hydrogen bonds: D:T.110, D:T.110, D:G.111, D:S.112, D:Q.242, D:K.268, C:T.297, C:T.297, C:T.297, C:T.297
- Water bridges: D:S.112, D:S.112, D:R.141, D:E.206, C:Y.298
- pi-Stacking: D:Y.138
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Kinetic and Crystallographic Analysis of Active Site Mutants of Escherichia coligamma-Aminobutyrate Aminotransferase. Biochemistry (2005)
- Release Date
- 2005-03-01
- Peptides
- 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.52 Å
- Oligo State
- homo-tetramer
- Ligands
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Kinetic and Crystallographic Analysis of Active Site Mutants of Escherichia coligamma-Aminobutyrate Aminotransferase. Biochemistry (2005)
- Release Date
- 2005-03-01
- Peptides
- 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D