- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 8 residues within 4Å:- Chain A: G.164, H.165, V.166, Y.167
- Chain C: G.164, H.165, V.166, Y.167
Ligand excluded by PLIPEDO.6: 9 residues within 4Å:- Chain A: D.45, A.47, G.48, G.49, L.53, H.57
- Chain B: T.76, V.80, L.81
Ligand excluded by PLIPEDO.7: 6 residues within 4Å:- Chain A: Q.69, K.72, L.73, P.85
- Chain B: A.27, D.28
Ligand excluded by PLIPEDO.8: 2 residues within 4Å:- Chain A: K.5, Q.9
Ligand excluded by PLIPEDO.9: 6 residues within 4Å:- Chain A: Q.50, Y.155, E.211, Q.242, R.398
- Ligands: PMP.11
Ligand excluded by PLIPEDO.15: 8 residues within 4Å:- Chain A: T.76, V.80, L.81
- Chain B: D.45, A.47, G.48, G.49, H.57
Ligand excluded by PLIPEDO.16: 5 residues within 4Å:- Chain B: I.22, H.23, P.24, A.378, R.381
Ligand excluded by PLIPEDO.17: 9 residues within 4Å:- Chain B: G.164, H.165, V.166, Y.167
- Chain D: G.164, H.165, V.166, Y.167
- Ligands: EDO.37
Ligand excluded by PLIPEDO.18: 5 residues within 4Å:- Chain B: Y.155, E.211, Q.242, R.398
- Ligands: SO4.4
Ligand excluded by PLIPEDO.24: 9 residues within 4Å:- Chain C: D.45, A.47, G.48, G.49, L.53, H.57
- Chain D: T.76, V.80, L.81
Ligand excluded by PLIPEDO.25: 6 residues within 4Å:- Chain C: Q.69, K.72, L.73, P.85
- Chain D: A.27, D.28
Ligand excluded by PLIPEDO.26: 7 residues within 4Å:- Chain C: Q.50, Y.155, E.211, Q.242, R.398
- Ligands: PMP.28, SO4.33
Ligand excluded by PLIPEDO.34: 9 residues within 4Å:- Chain C: T.76, V.80, L.81
- Chain D: D.45, A.47, G.48, G.49, L.53, H.57
Ligand excluded by PLIPEDO.35: 7 residues within 4Å:- Chain C: P.275, N.301
- Chain D: F.274, P.275, N.301, I.303, A.304
Ligand excluded by PLIPEDO.36: 4 residues within 4Å:- Chain D: I.22, H.23, P.24, R.381
Ligand excluded by PLIPEDO.37: 7 residues within 4Å:- Chain B: Y.167, R.168
- Chain D: V.166, Y.167, R.168, D.194
- Ligands: EDO.17
Ligand excluded by PLIPEDO.38: 6 residues within 4Å:- Chain D: Q.50, Y.155, E.211, Q.242, R.398
- Ligands: PMP.40
Ligand excluded by PLIP- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.10: 14 residues within 4Å:- Chain A: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Chain B: G.296, T.297
- Ligands: PMP.11
15 PLIP interactions:12 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:E.206, A:V.241, A:K.268
- Hydrogen bonds: A:T.110, A:G.111, A:S.112, A:Q.242, B:T.297, B:T.297
- Water bridges: A:S.112, A:Y.138, A:E.206, B:Y.298
- Salt bridges: A:K.268
- pi-Stacking: A:Y.138
PLP.19: 14 residues within 4Å:- Chain A: G.296, T.297
- Chain B: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Ligands: PMP.20
18 PLIP interactions:15 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:E.206, B:V.241, B:K.268
- Hydrogen bonds: B:T.110, B:G.111, B:S.112, B:Q.242, B:K.268, A:T.297, A:T.297
- Water bridges: B:T.110, B:T.110, B:Y.138, B:Y.138, B:E.206, A:Y.298
- Salt bridges: B:K.268
- pi-Stacking: B:Y.138
PLP.27: 14 residues within 4Å:- Chain C: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Chain D: G.296, T.297
- Ligands: PMP.28
18 PLIP interactions:14 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:E.206, C:V.241, C:K.268
- Hydrogen bonds: C:T.110, C:T.110, C:G.111, C:S.112, C:Q.242, D:T.297, D:T.297, D:T.297
- Water bridges: C:S.112, C:S.112, C:Y.138, C:E.206, D:Y.298
- Salt bridges: C:K.268
- pi-Stacking: C:Y.138
PLP.39: 13 residues within 4Å:- Chain C: G.296, T.297
- Chain D: T.110, G.111, S.112, Y.138, H.139, E.206, D.239, V.241, Q.242, K.268
- Ligands: PMP.40
16 PLIP interactions:12 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:E.206, D:V.241, D:K.268
- Hydrogen bonds: D:T.110, D:G.111, D:S.112, D:Q.242, C:T.297, C:T.297, C:T.297
- Water bridges: D:T.110, D:T.110, D:S.112, C:Y.298
- Salt bridges: D:K.268
- pi-Stacking: D:Y.138
- 4 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PMP.11: 16 residues within 4Å:- Chain A: Q.50, T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Chain B: G.296, T.297
- Ligands: EDO.9, PLP.10
17 PLIP interactions:13 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:E.206, A:V.241
- Hydrogen bonds: A:Q.50, A:T.110, A:G.111, A:S.112, A:Q.242, B:T.297, B:T.297
- Water bridges: A:S.112, A:Y.138, A:Y.138, A:E.206, B:Y.298, B:Y.298
- Salt bridges: A:K.268
- pi-Stacking: A:Y.138
PMP.20: 15 residues within 4Å:- Chain A: G.296, T.297
- Chain B: Q.50, T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Ligands: PLP.19
19 PLIP interactions:16 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:E.206, B:V.241
- Hydrogen bonds: B:Q.50, B:T.110, B:G.111, B:S.112, B:Q.242, B:K.268, A:T.297, A:T.297
- Water bridges: B:T.110, B:T.110, B:Y.138, B:Y.138, B:Y.138, B:E.206, A:Y.298
- Salt bridges: B:K.268
- pi-Stacking: B:Y.138
PMP.28: 15 residues within 4Å:- Chain C: T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Chain D: G.296, T.297
- Ligands: EDO.26, PLP.27
18 PLIP interactions:13 interactions with chain C, 5 interactions with chain D- Hydrophobic interactions: C:Y.138, C:E.206, C:V.241
- Hydrogen bonds: C:T.110, C:T.110, C:G.111, C:S.112, C:Q.242, C:K.268, D:T.297, D:T.297, D:T.297, D:T.297
- Water bridges: C:S.112, C:Y.138, C:E.206, D:Y.298
- Salt bridges: C:K.268
PMP.40: 16 residues within 4Å:- Chain C: G.296, T.297
- Chain D: Q.50, T.110, G.111, S.112, Y.138, H.139, G.140, E.206, D.239, V.241, Q.242, K.268
- Ligands: EDO.38, PLP.39
16 PLIP interactions:12 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:Y.138, D:E.206, D:V.241
- Hydrogen bonds: D:Q.50, D:T.110, D:G.111, D:S.112, D:Q.242, C:T.297, C:T.297, C:T.297
- Water bridges: D:T.110, D:T.110, D:S.112, C:Y.298
- Salt bridges: D:K.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Kinetic and Crystallographic Analysis of Active Site Mutants of Escherichia coligamma-Aminobutyrate Aminotransferase. Biochemistry (2005)
- Release Date
- 2005-03-01
- Peptides
- 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Kinetic and Crystallographic Analysis of Active Site Mutants of Escherichia coligamma-Aminobutyrate Aminotransferase. Biochemistry (2005)
- Release Date
- 2005-03-01
- Peptides
- 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D