SMTL ID : 1szz.3 (3 other biounits)

Crystal structure of peptide deformylase from Leptospira Interrogans complexed with inhibitor actinonin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.53, C.101, H.143, H.147 Ligands: BB2.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.101, A:H.143, A:H.147 ZN.3: 6 residues within 4Å: Chain B: Q.53, C.101, L.102, H.143, H.147 Ligands: BB2.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.101, B:H.143, B:H.147

2 x BB2: ACTINONIN(Non-covalent)

BB2.2: 19 residues within 4Å: Chain A: E.45, G.46, V.47, G.48, Q.53, E.69, T.74, W.98, E.99, G.100, C.101, L.102, S.103, Y.136, V.140, H.143, E.144, H.147 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.74, A:E.99, A:V.140, A:H.143 Hydrogen bonds: A:V.47, A:Q.53, A:G.100, A:G.100, A:G.100, A:L.102, A:S.103 BB2.4: 16 residues within 4Å: Chain B: G.46, V.47, G.48, Q.53, F.97, W.98, G.100, C.101, L.102, R.108, Y.136, V.140, H.143, E.144, H.147 Ligands: ZN.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.102, B:Y.136, B:V.140 Hydrogen bonds: B:V.47, B:Q.53, B:G.100, B:G.100, B:L.102, B:R.108, B:E.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Z. et al., Novel conformational states of peptide deformylase from pathogenic bacterium Leptospira interrogans: implications for population shift. J.Biol.Chem. (2005)

Release Date

2005-08-16

Peptides

Peptide deformylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

Peptide deformylase

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