- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x INI: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)
INI.2: 13 residues within 4Å:- Chain A: A.18, W.20, H.21, G.53, A.54, Y.55, E.56, F.78, V.79, I.80
- Chain E: L.110, S.111
- Ligands: PO4.1
9 PLIP interactions:1 interactions with chain E, 8 interactions with chain A- Hydrogen bonds: E:S.111, A:W.20, A:A.54, A:Y.55, A:F.78, A:I.80
- Water bridges: A:W.20, A:W.20
- pi-Stacking: A:W.20
INI.4: 13 residues within 4Å:- Chain A: L.110, S.111
- Chain B: A.18, W.20, G.53, A.54, Y.55, E.56, A.77, F.78, V.79, I.80
- Ligands: PO4.3
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:W.20, B:W.20, B:A.54, B:Y.55, B:F.78, B:I.80, A:S.111
- Water bridges: B:W.20, B:W.20
- pi-Stacking: B:W.20
INI.6: 13 residues within 4Å:- Chain B: L.110, S.111
- Chain C: A.18, W.20, G.53, A.54, Y.55, E.56, F.78, V.79, I.80, V.90
- Ligands: PO4.5
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:W.20, C:A.54, C:Y.55, C:F.78, C:I.80, B:S.111
- pi-Stacking: C:W.20, C:W.20
INI.8: 12 residues within 4Å:- Chain C: L.110, S.111
- Chain D: A.18, W.20, G.53, A.54, Y.55, E.56, F.78, V.79, I.80
- Ligands: PO4.7
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:W.20, D:A.54, D:Y.55, D:F.78, D:I.80, C:S.111
- pi-Stacking: D:W.20
INI.10: 12 residues within 4Å:- Chain D: L.110, S.111
- Chain E: A.18, W.20, G.53, A.54, Y.55, E.56, F.78, V.79, I.80
- Ligands: PO4.9
10 PLIP interactions:8 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:W.20, E:W.20, E:A.54, E:Y.55, E:F.78, E:I.80, D:S.111
- Water bridges: E:F.78, D:K.136
- pi-Stacking: E:W.20
INI.12: 13 residues within 4Å:- Chain F: A.18, W.20, H.21, G.53, A.54, Y.55, E.56, F.78, V.79, I.80
- Chain J: L.110, S.111
- Ligands: PO4.11
9 PLIP interactions:8 interactions with chain F, 1 interactions with chain J- Hydrogen bonds: F:W.20, F:A.54, F:Y.55, F:F.78, F:I.80, J:S.111
- Water bridges: F:W.20, F:W.20
- pi-Stacking: F:W.20
INI.14: 13 residues within 4Å:- Chain F: L.110, S.111
- Chain G: A.18, W.20, G.53, A.54, Y.55, E.56, A.77, F.78, V.79, I.80
- Ligands: PO4.13
10 PLIP interactions:9 interactions with chain G, 1 interactions with chain F- Hydrogen bonds: G:W.20, G:W.20, G:A.54, G:Y.55, G:F.78, G:I.80, F:S.111
- Water bridges: G:W.20, G:W.20
- pi-Stacking: G:W.20
INI.16: 13 residues within 4Å:- Chain G: L.110, S.111
- Chain H: A.18, W.20, G.53, A.54, Y.55, E.56, F.78, V.79, I.80, V.90
- Ligands: PO4.15
8 PLIP interactions:7 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:W.20, H:A.54, H:Y.55, H:F.78, H:I.80, G:S.111
- pi-Stacking: H:W.20, H:W.20
INI.18: 12 residues within 4Å:- Chain H: L.110, S.111
- Chain I: A.18, W.20, G.53, A.54, Y.55, E.56, F.78, V.79, I.80
- Ligands: PO4.17
7 PLIP interactions:6 interactions with chain I, 1 interactions with chain H- Hydrogen bonds: I:W.20, I:A.54, I:Y.55, I:F.78, I:I.80, H:S.111
- pi-Stacking: I:W.20
INI.20: 12 residues within 4Å:- Chain I: L.110, S.111
- Chain J: A.18, W.20, G.53, A.54, Y.55, E.56, F.78, V.79, I.80
- Ligands: PO4.19
10 PLIP interactions:8 interactions with chain J, 2 interactions with chain I- Hydrogen bonds: J:W.20, J:W.20, J:A.54, J:Y.55, J:F.78, J:I.80, I:S.111
- Water bridges: J:F.78, I:K.136
- pi-Stacking: J:W.20
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klinke, S. et al., Crystallographic studies on Decameric Brucella spp. Lumazine Synthase: A Novel Quaternary Arrangement Evolved for a New Function?. J.Mol.Biol. (2005)
- Release Date
- 2005-04-19
- Peptides
- 6,7-dimethyl-8-ribityllumazine synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x INI: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klinke, S. et al., Crystallographic studies on Decameric Brucella spp. Lumazine Synthase: A Novel Quaternary Arrangement Evolved for a New Function?. J.Mol.Biol. (2005)
- Release Date
- 2005-04-19
- Peptides
- 6,7-dimethyl-8-ribityllumazine synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E