SMTL ID : 1t3e.1

Structural basis of dynamic glycine receptor clustering

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-2-1-mer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.119 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.119 SO4.2: 3 residues within 4Å: Chain A: H.161, R.329, I.334 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.161, A:R.329 SO4.3: 5 residues within 4Å: Chain A: K.287, P.288, G.289, L.290, R.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.289, A:L.290 Salt bridges: A:K.287, A:R.355 SO4.4: 3 residues within 4Å: Chain A: R.33 Chain B: N.228 Ligands: SO4.7 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.33 Hydrogen bonds: B:N.228, B:N.228 SO4.5: 4 residues within 4Å: Chain A: T.226, N.228 Chain B: R.33 Ligands: SO4.6 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Salt bridges: B:R.33 Hydrogen bonds: A:T.226, A:T.226, A:N.228 SO4.6: 7 residues within 4Å: Chain A: N.197, E.199, R.212, N.228 Chain B: Y.32, R.33 Ligands: SO4.5 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Salt bridges: B:R.33, A:R.212 Hydrogen bonds: A:N.197, A:N.228 SO4.7: 7 residues within 4Å: Chain A: Y.32, R.33 Chain B: N.197, E.199, R.212, N.228 Ligands: SO4.4 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.33, B:R.212 Hydrogen bonds: B:N.228 SO4.8: 6 residues within 4Å: Chain B: K.287, P.288, G.289, L.290, S.315, R.355 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.289, B:L.290, B:S.315 Salt bridges: B:R.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sola, M. et al., Structural basis of dynamic glycine receptor clustering by gephyrin. Embo J. (2004)

Release Date

2004-07-27

Peptides

Gephyrin: AB
49-mer fragment of Glycine receptor beta chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

Gephyrin

49-mer fragment of Glycine receptor beta chain