- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 2 residues within 4Å:- Chain A: S.129, R.130
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.130
- Water bridges: A:D.131
GOL.10: 7 residues within 4Å:- Chain B: W.331, A.369, V.373, F.375, A.546, E.743
- Ligands: SMO.9
No protein-ligand interaction detected (PLIP)GOL.11: 3 residues within 4Å:- Chain B: R.567, Q.570, D.621
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.567
- Water bridges: B:E.566, B:Q.570, B:Q.570, B:D.621
GOL.13: 6 residues within 4Å:- Chain A: M.65
- Chain C: G.32, T.76, N.107, R.108, T.110
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.107, C:R.108, C:R.108
GOL.14: 3 residues within 4Å:- Chain C: L.14, V.143, R.168
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.168, C:R.168
GOL.23: 4 residues within 4Å:- Chain B: W.220, R.247
- Chain E: I.218, R.247
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain E- Hydrogen bonds: B:R.247, E:R.247, E:R.247
- Water bridges: B:R.32
GOL.24: 7 residues within 4Å:- Chain D: V.52, L.141
- Chain E: L.708, Y.711, L.712, I.713
- Chain F: R.186
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:R.186, F:R.186, E:I.713
GOL.25: 8 residues within 4Å:- Chain E: L.692, E.694, I.696, L.712, T.774
- Chain F: R.185, I.257, H.258
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:R.185, E:E.694
- Water bridges: F:R.185, F:H.258, E:E.694
GOL.27: 6 residues within 4Å:- Chain D: A.63, P.64, S.120
- Chain F: F.78, Q.103, N.107
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain D- Hydrogen bonds: F:N.107, D:S.120, D:S.120
- Water bridges: F:Q.103, F:N.107
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain B: S.17, P.672, M.673, E.676
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.17
- Water bridges: B:S.17, B:M.673, B:E.676, B:E.676, B:R.680
SO4.5: 3 residues within 4Å:- Chain B: R.168, R.318, I.358
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.168, B:R.318
SO4.6: 2 residues within 4Å:- Chain B: V.165, R.168
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.168
SO4.7: 4 residues within 4Å:- Chain B: P.102, N.106, R.110, T.160
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.110, B:R.110, B:R.110
- Salt bridges: B:R.110
SO4.17: 4 residues within 4Å:- Chain E: P.102, N.106, V.108, R.110
3 PLIP interactions:3 interactions with chain E- Water bridges: E:N.106, E:R.110
- Salt bridges: E:R.110
SO4.18: 3 residues within 4Å:- Chain E: R.168, R.318, I.358
3 PLIP interactions:3 interactions with chain E- Water bridges: E:L.151
- Salt bridges: E:R.168, E:R.318
SO4.19: 4 residues within 4Å:- Chain B: Q.215, L.243
- Chain E: R.21, S.527
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain E- Hydrogen bonds: B:Q.215, E:S.527
- Water bridges: E:R.21
- Salt bridges: E:R.21
SO4.20: 3 residues within 4Å:- Chain E: P.525, A.526, S.527
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:A.526, E:S.527, E:S.527
- 2 x MCN: PTERIN CYTOSINE DINUCLEOTIDE(Non-covalent)
MCN.8: 34 residues within 4Å:- Chain A: Q.106, C.144
- Chain B: G.253, G.254, F.255, G.256, R.371, S.506, G.507, Q.508, H.510, T.513, A.544, Y.545, A.546, S.547, R.548, G.549, A.550, C.666, T.668, M.669, I.670, N.671, I.674, V.675, Q.678, I.738, K.739, G.740, M.741, G.742, E.743
- Ligands: SMO.9
22 PLIP interactions:20 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:A.550
- Hydrogen bonds: B:G.254, B:F.255, B:S.506, B:Q.508, B:T.513, B:Y.545, B:R.548, B:G.549, B:A.550, B:T.668, B:I.670, B:N.671, B:Q.678, B:K.739, B:M.741, B:G.742, A:Q.106
- Water bridges: B:R.371, B:V.551, A:Q.106
- Salt bridges: B:H.510
MCN.21: 34 residues within 4Å:- Chain D: Q.106, C.144
- Chain E: G.253, G.254, F.255, G.256, R.371, S.506, G.507, Q.508, H.510, T.513, A.544, Y.545, A.546, S.547, R.548, G.549, A.550, C.666, T.668, M.669, I.670, N.671, I.674, V.675, Q.678, I.738, K.739, G.740, M.741, G.742, E.743
- Ligands: SMO.22
22 PLIP interactions:20 interactions with chain E, 2 interactions with chain D- Hydrophobic interactions: E:A.550
- Hydrogen bonds: E:G.254, E:F.255, E:S.506, E:Q.508, E:Y.545, E:R.548, E:G.549, E:A.550, E:T.668, E:I.670, E:N.671, E:Q.678, E:K.739, E:M.741, E:G.742, D:Q.106, D:C.107
- Water bridges: E:R.371, E:R.371, E:V.551
- Salt bridges: E:H.510
- 2 x SMO: DIOXOSULFIDOMOLYBDENUM(VI) ION(Non-covalent)
SMO.9: 10 residues within 4Å:- Chain B: Q.224, F.255, G.256, Y.370, R.371, Y.545, A.546, E.743
- Ligands: MCN.8, GOL.10
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.224, B:A.546
SMO.22: 10 residues within 4Å:- Chain E: Q.224, F.255, G.256, Y.370, R.371, V.373, Y.545, A.546, E.743
- Ligands: MCN.21
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:Q.224, E:A.544, E:A.546
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.12: 33 residues within 4Å:- Chain A: Q.50, G.51, V.52, L.69
- Chain C: I.29, I.30, A.31, G.32, G.33, Q.34, S.35, L.36, L.53, A.73, H.77, H.99, V.100, A.101, V.105, G.109, T.110, G.113, S.114, A.116, H.117, A.122, E.123, L.160, E.164, V.165, L.166, G.188, Y.190
25 PLIP interactions:23 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:A.101, C:V.105, C:V.105, A:V.52, A:L.69
- Hydrogen bonds: C:I.29, C:I.29, C:A.31, C:G.32, C:G.33, C:Q.34, C:S.35, C:S.35, C:L.36, C:A.101, C:T.110, C:E.123, C:E.123, C:E.123, C:L.166, C:L.166
- Water bridges: C:R.28, C:A.191, C:A.191
- pi-Stacking: C:Y.190
FAD.26: 33 residues within 4Å:- Chain D: Q.50, G.51, V.52, L.69
- Chain F: I.29, I.30, A.31, G.32, G.33, Q.34, S.35, L.36, L.53, A.73, H.77, H.99, V.100, A.101, V.105, G.109, T.110, G.113, S.114, A.116, H.117, A.122, E.123, L.160, E.164, V.165, L.166, G.188, Y.190
26 PLIP interactions:24 interactions with chain F, 2 interactions with chain D- Hydrophobic interactions: F:A.101, F:V.105, F:V.105, D:V.52, D:L.69
- Hydrogen bonds: F:I.29, F:I.29, F:A.31, F:G.32, F:G.33, F:Q.34, F:S.35, F:S.35, F:L.36, F:A.101, F:T.110, F:E.123, F:E.123, F:E.123, F:L.166, F:L.166
- Water bridges: F:S.114, F:Y.190, F:A.191, F:A.191
- pi-Stacking: F:Y.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonin, I. et al., Active site geometry and substrate recognition of the molybdenum hydroxylase quinoline 2-oxidoreductase. STRUCTURE (2004)
- Release Date
- 2004-09-14
- Peptides
- quinoline 2-oxidoreductase small subunit: AD
quinoline 2-oxidoreductase large subunit: BE
quinoline 2-oxidoreductase medium subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MCN: PTERIN CYTOSINE DINUCLEOTIDE(Non-covalent)
- 2 x SMO: DIOXOSULFIDOMOLYBDENUM(VI) ION(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonin, I. et al., Active site geometry and substrate recognition of the molybdenum hydroxylase quinoline 2-oxidoreductase. STRUCTURE (2004)
- Release Date
- 2004-09-14
- Peptides
- quinoline 2-oxidoreductase small subunit: AD
quinoline 2-oxidoreductase large subunit: BE
quinoline 2-oxidoreductase medium subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F