SMTL ID : 1t4s.1

arginase-L-valine complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.119, H.121, D.227, D.229 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.119, A:H.121, A:D.227, A:D.229, H2O.1 MN.2: 5 residues within 4Å: Chain A: H.96, D.119, D.123, D.227 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.96, A:D.119, A:D.123, A:D.227, H2O.1 MN.4: 5 residues within 4Å: Chain B: D.119, H.121, D.227, D.229 Ligands: MN.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.119, B:H.121, B:D.227, B:D.229, H2O.1 MN.5: 5 residues within 4Å: Chain B: H.96, D.119, D.123, D.227 Ligands: MN.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.96, B:D.119, B:D.123, B:D.227, H2O.1 MN.7: 5 residues within 4Å: Chain C: D.119, H.121, D.227, D.229 Ligands: MN.8 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.121, C:D.227, C:D.229, C:D.229, H2O.2 MN.8: 5 residues within 4Å: Chain C: H.96, D.119, D.123, D.227 Ligands: MN.7 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.96, C:D.119, C:D.123, C:D.227, H2O.2

3 x VAL: VALINE(Non-covalent)

VAL.3: 8 residues within 4Å: Chain A: H.121, N.125, T.130, S.132, H.136, D.178, E.181, T.241 7 PLIP interactions: 1 Ligand-Ligand interactions, 6 interactions with chain A Hydrogen bonds: V.3, A:N.125, A:S.132, A:N.134, A:D.178, A:E.181 Hydrophobic interactions: A:T.241 VAL.6: 8 residues within 4Å: Chain B: H.121, N.125, T.130, S.132, N.134, H.136, D.178, E.181 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:N.125, B:S.132, B:N.134, B:D.178, B:E.181, V.6 VAL.9: 9 residues within 4Å: Chain C: H.121, N.125, T.130, S.132, N.134, H.136, D.178, E.181, T.241 9 PLIP interactions: 1 Ligand-Ligand interactions, 8 interactions with chain C Hydrogen bonds: V.9, C:N.125, C:S.132, C:N.134, C:D.178, C:E.181 Hydrophobic interactions: C:T.241 Water bridges: C:G.137, C:G.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cama, E. et al., Inhibitor coordination interactions in the binuclear manganese cluster of arginase. Biochemistry (2004)

Release Date

2004-10-12

Peptides

Arginase 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Arginase 1

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