SMTL ID : 1t5f.1

arginase I-AOH complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.96, D.119, D.123, D.227 Ligands: MN.2, DHH.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.96, A:D.119, A:D.123, A:D.227, H2O.3 MN.2: 6 residues within 4Å: Chain A: D.119, H.121, D.227, D.229 Ligands: MN.1, DHH.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.119, A:H.121, A:D.227, A:D.229, H2O.3 MN.4: 6 residues within 4Å: Chain B: H.96, D.119, D.123, D.227 Ligands: MN.5, DHH.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.96, B:D.119, B:D.123, B:D.227, H2O.7 MN.5: 6 residues within 4Å: Chain B: D.119, H.121, D.227, D.229 Ligands: MN.4, DHH.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.119, B:H.121, B:D.227, B:D.229, H2O.7 MN.7: 6 residues within 4Å: Chain C: D.119, H.121, D.227, D.229 Ligands: MN.8, DHH.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.119, C:H.121, C:D.227, C:D.229, H2O.10 MN.8: 6 residues within 4Å: Chain C: H.96, D.119, D.123, D.227 Ligands: MN.7, DHH.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.96, C:D.119, C:D.123, C:D.227, H2O.10

3 x DHH: (S)-2-AMINO-7,7-DIHYDROXYHEPTANOIC ACID(Non-covalent)

DHH.3: 15 residues within 4Å: Chain A: H.96, D.119, H.121, D.123, N.125, S.132, A.136, G.137, D.178, E.181, D.227, D.229, E.272 Ligands: MN.1, MN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.121 Hydrogen bonds: A:N.125, A:S.132, A:D.178, A:E.272 Water bridges: A:D.123, A:D.123, A:G.137, A:G.137 Salt bridges: A:H.96, A:H.121 DHH.6: 14 residues within 4Å: Chain B: H.96, D.119, H.121, D.123, N.125, S.132, A.136, G.137, D.178, E.181, D.227, E.272 Ligands: MN.4, MN.5 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:H.121 Hydrogen bonds: B:N.125, B:S.132, B:D.178, B:E.272 Water bridges: B:D.123, B:D.123, B:G.137, B:G.137 Salt bridges: B:H.96, B:H.121 DHH.9: 14 residues within 4Å: Chain C: H.96, D.119, H.121, D.123, N.125, S.132, A.136, G.137, D.178, E.181, D.227, E.272 Ligands: MN.7, MN.8 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:H.121 Hydrogen bonds: C:N.125, C:S.132, C:D.178, C:E.272 Water bridges: C:D.123, C:D.123, C:G.137, C:G.137 Salt bridges: C:H.96, C:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, H. et al., Design of amino acid aldehydes as transition-state analogue inhibitors of arginase. J.Am.Chem.Soc. (2004)

Release Date

2005-05-17

Peptides

Arginase 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Arginase 1

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