SMTL ID : 1t67.1

Crystal Structure of Human HDAC8 complexed with MS-344

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.178, H.180, D.267, G.304 Ligands: B3N.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.178, A:H.180, A:D.267

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: D.176, D.178, H.180, S.199, L.200, H.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.200, A:L.200 NA.3: 4 residues within 4Å: Chain A: F.189, T.192, V.195, Y.225 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.192

1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)

B3N.4: 14 residues within 4Å: Chain A: Y.100, D.101, H.142, H.143, G.151, F.152, D.178, H.180, F.208, D.267, M.274, G.304, Y.306 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.152, A:F.152, A:F.208, A:F.208 Hydrogen bonds: A:H.143, A:Y.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Somoza, J.R. et al., Structural Snapshots of Human HDAC8 Provide Insights into the Class I Histone Deacetylases. Structure (2004)

Release Date

2004-07-27

Peptides

Histone deacetylase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone deacetylase 8

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