SMTL ID : 1t6y.1

Crystal structure of ADP, AMP, and FMN bound TM379

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: V.166, H.167, P.179, T.180, A.181, V.232, Y.233, I.234, F.237, G.239, D.240, L.241, Y.242 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.167, A:T.180, A:T.180, A:I.234, A:I.234, A:D.240, A:L.241, A:Y.242 ADP.4: 14 residues within 4Å: Chain B: P.179, T.180, A.181, N.182, E.231, V.232, Y.233, I.234, F.237, E.238, G.239, D.240, L.241, Y.242 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.180, B:T.180, B:N.182, B:E.231, B:I.234, B:I.234, B:G.239, B:D.240, B:L.241, B:Y.242

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 16 residues within 4Å: Chain A: I.5, G.6, V.7, F.8, H.12, G.14, H.15, V.18, V.98, G.99, D.101, I.125, E.126, D.127, V.128, V.135 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.5, A:V.7, A:F.8, A:G.99, A:D.101, A:F.102, A:V.128, A:V.128 Salt bridges: A:H.15 AMP.5: 15 residues within 4Å: Chain B: I.5, G.6, V.7, F.8, H.12, G.14, H.15, V.18, V.98, G.99, R.100, E.126, D.127, V.128, V.135 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:I.5, B:V.7, B:F.8, B:G.99, B:R.100, B:V.128, B:V.135 Salt bridges: B:H.15

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.3: 14 residues within 4Å: Chain A: F.178, T.180, V.197, V.213, N.215, K.229, E.231, Y.233, R.255, E.257, K.258, L.266, I.270, D.273 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.178, A:T.180, A:V.197, A:V.197, A:V.213, A:N.215, A:Y.233, A:I.270 Hydrogen bonds: A:N.215, A:N.215, A:R.255, A:R.255, A:K.258, A:K.258 Salt bridges: A:K.229 FMN.6: 14 residues within 4Å: Chain B: T.180, V.197, V.213, N.215, F.218, K.229, E.231, R.255, E.257, K.258, F.260, L.266, I.270, D.273 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.180, B:V.197, B:V.197, B:V.213, B:N.215, B:I.270 Hydrogen bonds: B:N.215, B:R.255, B:R.255, B:K.258, B:K.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, D.H. et al., Crystal structure of ADP bound FAD synthetase. To be Published

Release Date

2004-08-10

Peptides

riboflavin kinase/FMN adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

riboflavin kinase/FMN adenylyltransferase

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