SMTL ID : 1t8g.2 (1 other biounit)

Crystal structure of phage T4 lysozyme mutant L32A/L33A/T34A/C54T/C97A/E108V

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-octamer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: Q.141, T.142, P.143, N.144, R.145 Chain E: N.144 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:Q.141, A:T.142, A:N.144, A:R.145, E:N.144, E:N.144 PO4.5: 6 residues within 4Å: Chain B: Q.141, T.142, P.143, N.144, R.145 Chain F: N.144 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain B Hydrogen bonds: F:N.144, F:N.144, B:Q.141, B:T.142, B:N.144, B:R.145 PO4.9: 6 residues within 4Å: Chain C: Q.141, T.142, P.143, N.144, R.145 Chain H: N.144 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain H Hydrogen bonds: C:Q.141, C:T.142, C:N.144, C:R.145, H:N.144, H:N.144 PO4.13: 6 residues within 4Å: Chain D: Q.141, T.142, P.143, N.144, R.145 Chain G: N.144 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain G Hydrogen bonds: D:Q.141, D:T.142, D:N.144, D:R.145, G:N.144, G:N.144 PO4.17: 6 residues within 4Å: Chain A: N.144 Chain E: Q.141, T.142, P.143, N.144, R.145 6 PLIP interactions: 4 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:Q.141, E:T.142, E:N.144, E:R.145, A:N.144, A:N.144 PO4.21: 6 residues within 4Å: Chain B: N.144 Chain F: Q.141, T.142, P.143, N.144, R.145 6 PLIP interactions: 4 interactions with chain F, 2 interactions with chain B Hydrogen bonds: F:Q.141, F:T.142, F:N.144, F:R.145, B:N.144, B:N.144 PO4.25: 6 residues within 4Å: Chain D: N.144 Chain G: Q.141, T.142, P.143, N.144, R.145 6 PLIP interactions: 4 interactions with chain G, 2 interactions with chain D Hydrogen bonds: G:Q.141, G:T.142, G:N.144, G:R.145, D:N.144, D:N.144 PO4.29: 6 residues within 4Å: Chain C: N.144 Chain H: Q.141, T.142, P.143, N.144, R.145 6 PLIP interactions: 4 interactions with chain H, 2 interactions with chain C Hydrogen bonds: H:Q.141, H:T.142, H:N.144, H:R.145, C:N.144, C:N.144

16 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.137 Chain H: R.137 Ligands: CL.30 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: F.114, T.115, N.116, S.117 Chain H: R.137 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: R.137 Chain G: R.137 Ligands: CL.26 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: F.114, T.115, N.116, S.117 Chain G: R.137 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: R.137 Chain F: R.137 Ligands: CL.22 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain C: F.114, T.115, N.116, S.117 Chain F: R.137 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain D: R.137 Chain E: R.137 Ligands: CL.18 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain D: F.114, T.115, N.116, S.117 Chain E: R.137 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain D: R.137 Chain E: R.137 Ligands: CL.14 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain D: R.137 Chain E: F.114, T.115, N.116, S.117 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain C: R.137 Chain F: R.137 Ligands: CL.10 Ligand excluded by PLIP CL.23: 5 residues within 4Å: Chain C: R.137 Chain F: F.114, T.115, N.116, S.117 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain B: R.137 Chain G: R.137 Ligands: CL.6 Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain B: R.137 Chain G: F.114, T.115, N.116, S.117 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain A: R.137 Chain H: R.137 Ligands: CL.2 Ligand excluded by PLIP CL.31: 5 residues within 4Å: Chain A: R.137 Chain H: F.114, T.115, N.116, S.117 Ligand excluded by PLIP

8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 1 residues within 4Å: Chain A: Y.88 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.88 BME.8: 1 residues within 4Å: Chain B: Y.88 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.88 BME.12: 1 residues within 4Å: Chain C: Y.88 1 PLIP interactions: 1 interactions with chain C Water bridges: C:Y.88 BME.16: 1 residues within 4Å: Chain D: Y.88 1 PLIP interactions: 1 interactions with chain D Water bridges: D:Y.88 BME.20: 1 residues within 4Å: Chain E: Y.88 No protein-ligand interaction detected (PLIP) BME.24: 1 residues within 4Å: Chain F: Y.88 No protein-ligand interaction detected (PLIP) BME.28: 1 residues within 4Å: Chain G: Y.88 No protein-ligand interaction detected (PLIP) BME.32: 1 residues within 4Å: Chain H: Y.88 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, M.M. et al., Alanine-scanning mutagenesis of the beta-sheet region of phage T4 lysozyme suggests that tertiary context has a dominant effect on beta-sheet formation. Protein Sci. (2004)

Release Date

2004-10-19

Peptides

Lysozyme: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Lysozyme

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