SMTL ID : 1t8t.2 (1 other biounit)

Crystal Structure of human 3-O-Sulfotransferase-3 with bound PAP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 17 residues within 4Å: Chain A: K.27, G.28, G.29, T.30, R.31, A.32, F.36, R.108, S.116, I.181, F.214, P.215, L.229, K.233, G.234, R.235, H.237 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:K.27, A:G.28, A:G.29, A:T.30, A:T.30, A:T.30, A:R.31, A:R.108, A:R.108, A:S.116, A:P.215, A:G.234, A:R.235 Water bridges: A:K.27, A:A.32, A:K.233, A:G.234, A:R.235, A:R.235 Salt bridges: A:K.27, A:R.108, A:K.233, A:H.237 pi-Stacking: A:F.214 A3P.2: 17 residues within 4Å: Chain B: K.27, G.28, G.29, T.30, R.31, A.32, F.36, R.108, S.116, I.181, F.214, P.215, L.229, K.233, G.234, R.235, H.237 26 PLIP interactions: 26 interactions with chain B Hydrogen bonds: B:K.27, B:G.28, B:G.29, B:T.30, B:T.30, B:R.31, B:R.108, B:R.108, B:S.116, B:P.215, B:G.234, B:R.235 Water bridges: B:K.27, B:A.32, B:K.233, B:K.233, B:G.234, B:R.235, B:R.235, B:R.235, B:R.235 Salt bridges: B:K.27, B:R.108, B:K.233, B:H.237 pi-Stacking: B:F.214 A3P.4: 17 residues within 4Å: Chain C: K.27, G.28, G.29, T.30, R.31, A.32, F.36, R.108, S.116, I.181, F.214, P.215, L.229, K.233, G.234, R.235, H.237 23 PLIP interactions: 23 interactions with chain C Hydrogen bonds: C:K.27, C:G.28, C:G.29, C:T.30, C:T.30, C:R.31, C:R.108, C:R.108, C:S.116, C:P.215, C:G.234, C:R.235 Water bridges: C:K.27, C:A.32, C:K.233, C:G.234, C:R.235, C:R.235 Salt bridges: C:K.27, C:R.108, C:K.233, C:H.237 pi-Stacking: C:F.214 A3P.5: 17 residues within 4Å: Chain D: K.27, G.28, G.29, T.30, R.31, A.32, F.36, R.108, S.116, I.181, F.214, P.215, L.229, K.233, G.234, R.235, H.237 27 PLIP interactions: 27 interactions with chain D Hydrogen bonds: D:K.27, D:G.28, D:G.29, D:T.30, D:T.30, D:T.30, D:R.31, D:R.108, D:R.108, D:S.116, D:P.215, D:G.234, D:R.235 Water bridges: D:K.27, D:A.32, D:K.233, D:K.233, D:G.234, D:R.235, D:R.235, D:R.235, D:R.235 Salt bridges: D:K.27, D:R.108, D:K.233, D:H.237 pi-Stacking: D:F.214

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 7 residues within 4Å: Chain B: R.31, L.229, G.230, T.232, K.233 Chain C: N.2, S.3 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:T.232, B:K.233 Hydrogen bonds: B:G.230, C:S.3 Water bridges: B:R.31, B:K.233, C:S.3 Salt bridges: B:R.31, B:K.80, B:K.233 CIT.6: 7 residues within 4Å: Chain A: N.2, S.3 Chain D: R.31, L.229, G.230, T.232, K.233 10 PLIP interactions: 8 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:T.232, D:K.233 Hydrogen bonds: D:G.230, A:S.3 Water bridges: D:R.31, D:K.233, A:S.3 Salt bridges: D:R.31, D:K.80, D:K.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moon, A.F. et al., Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1. J.Biol.Chem. (2004)

Release Date

2004-08-31

Peptides

heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1

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