SMTL ID : 1t90.1

Crystal structure of methylmalonate semialdehyde dehydrogenase from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: I.148, A.149, P.150, F.151, N.152, W.160, K.175, P.176, S.177, E.178, R.179, H.208, V.211, F.225, V.226, G.227, S.228, V.231, L.249, T.250, G.251, A.252, C.283, E.381, F.383, N.409, F.448 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.150, A:V.226 Hydrogen bonds: A:A.149, A:F.151, A:K.175, A:E.178, A:S.228, A:T.250, A:A.252, A:E.381, A:N.409 Water bridges: A:R.179, A:R.179, A:K.229, A:T.250 Salt bridges: A:R.179 NAD.2: 26 residues within 4Å: Chain B: I.148, A.149, P.150, F.151, N.152, W.160, K.175, P.176, E.178, R.179, H.208, V.211, F.225, V.226, G.227, S.228, V.231, L.249, T.250, G.251, A.252, C.283, E.381, F.383, N.409, F.448 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.150, B:W.160, B:V.226 Hydrogen bonds: B:A.149, B:F.151, B:K.175, B:E.178, B:R.179, B:S.228, B:T.250, B:A.252, B:E.381, B:N.409 Water bridges: B:R.179, B:K.229, B:T.250 Salt bridges: B:R.179 pi-Stacking: B:H.208 NAD.3: 25 residues within 4Å: Chain C: I.148, A.149, P.150, F.151, N.152, W.160, K.175, P.176, E.178, H.208, V.211, F.225, V.226, G.227, S.228, V.231, L.249, T.250, G.251, A.252, C.283, E.381, F.383, N.409, F.448 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:P.150, C:V.226 Hydrogen bonds: C:A.149, C:F.151, C:K.175, C:E.178, C:S.228, C:T.250, C:A.252, C:E.381, C:N.409 Water bridges: C:K.229 pi-Stacking: C:H.208 NAD.4: 27 residues within 4Å: Chain D: I.148, A.149, P.150, F.151, N.152, W.160, K.175, P.176, S.177, E.178, R.179, H.208, V.211, F.225, V.226, G.227, S.228, V.231, L.249, T.250, G.251, A.252, C.283, E.381, F.383, N.409, F.448 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:P.150, D:W.160, D:V.226 Hydrogen bonds: D:A.149, D:F.151, D:K.175, D:E.178, D:R.179, D:S.228, D:T.250, D:A.252, D:E.381, D:N.409 Water bridges: D:R.179 Salt bridges: D:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dubourg, H. et al., Crystal structure analysis of Methylmalonate-Semialdehyde Dehydrogenase from Bacillus subtilis. To be published

Release Date

2006-01-03

Peptides

Probable methylmalonate-semialdehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Probable methylmalonate-semialdehyde dehydrogenase