- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 7 residues within 4Å:- Chain A: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.5
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.182, A:D.232, A:S.235, A:T.236, H2O.2
K.8: 7 residues within 4Å:- Chain B: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.9
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.182, B:D.232, H2O.16
K.11: 7 residues within 4Å:- Chain C: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.14
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.182, C:D.232, C:S.235, C:T.236, H2O.28
K.17: 7 residues within 4Å:- Chain D: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.18
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.182, D:D.232, H2O.42
K.20: 7 residues within 4Å:- Chain E: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.23
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.182, E:D.232, E:S.235, E:T.236, H2O.54
K.26: 7 residues within 4Å:- Chain F: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.27
3 PLIP interactions:2 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.182, F:D.232, H2O.69
K.29: 7 residues within 4Å:- Chain G: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.32
5 PLIP interactions:4 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:D.182, G:D.232, G:S.235, G:T.236, H2O.81
K.35: 7 residues within 4Å:- Chain H: D.182, D.232, S.235, T.236, S.302, H.315
- Ligands: GOL.36
3 PLIP interactions:2 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:D.182, H:D.232, H2O.95
- 8 x ALA: ALANINE(Non-covalent)
ALA.3: 5 residues within 4Å:- Chain A: A.130, V.190, I.191, Y.192
- Ligands: ALA.4
3 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain A- Hydrogen bonds: A.4, A:Y.192
- Hydrophobic interactions: A:I.191
ALA.4: 4 residues within 4Å:- Chain A: A.130, S.131, Y.192
- Ligands: ALA.3
3 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain A- Hydrogen bonds: A.3, A:A.130
- Water bridges: A:L.132
ALA.12: 5 residues within 4Å:- Chain C: A.130, V.190, I.191, Y.192
- Ligands: ALA.13
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:I.191
- Hydrogen bonds: C:Y.192, A.13
ALA.13: 4 residues within 4Å:- Chain C: A.130, S.131, Y.192
- Ligands: ALA.12
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Ligand interactions- Hydrogen bonds: C:A.130, A.12
- Water bridges: C:L.132
ALA.21: 5 residues within 4Å:- Chain E: A.130, V.190, I.191, Y.192
- Ligands: ALA.22
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Ligand interactions- Hydrophobic interactions: E:I.191
- Hydrogen bonds: E:Y.192, A.22
ALA.22: 4 residues within 4Å:- Chain E: A.130, S.131, Y.192
- Ligands: ALA.21
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Ligand interactions- Hydrogen bonds: E:A.130, A.21
- Water bridges: E:L.132
ALA.30: 5 residues within 4Å:- Chain G: A.130, V.190, I.191, Y.192
- Ligands: ALA.31
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:I.191
- Hydrogen bonds: G:Y.192
ALA.31: 4 residues within 4Å:- Chain G: A.130, S.131, Y.192
- Ligands: ALA.30
1 PLIP interactions:1 interactions with chain G- Water bridges: G:L.132
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 9 residues within 4Å:- Chain A: D.182, Y.201, D.232, F.306, L.311, H.315, H.333
- Ligands: ZN.1, K.2
3 PLIP interactions:3 interactions with chain A- Water bridges: A:D.182, A:D.182, A:S.186
GOL.6: 9 residues within 4Å:- Chain A: K.162, A.165, L.170, S.172, S.187, Y.204, L.206, N.207, P.208
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.170, A:L.206
- Water bridges: A:L.206
GOL.9: 7 residues within 4Å:- Chain B: D.182, D.232, L.311, H.315, H.333
- Ligands: ZN.7, K.8
1 PLIP interactions:1 interactions with chain B- Water bridges: B:S.186
GOL.14: 9 residues within 4Å:- Chain C: D.182, Y.201, D.232, F.306, L.311, H.315, H.333
- Ligands: ZN.10, K.11
3 PLIP interactions:3 interactions with chain C- Water bridges: C:D.182, C:D.182, C:S.186
GOL.15: 9 residues within 4Å:- Chain C: K.162, A.165, L.170, S.172, S.187, Y.204, L.206, N.207, P.208
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:L.170, C:L.206
- Water bridges: C:L.206
GOL.18: 7 residues within 4Å:- Chain D: D.182, D.232, L.311, H.315, H.333
- Ligands: ZN.16, K.17
1 PLIP interactions:1 interactions with chain D- Water bridges: D:S.186
GOL.23: 9 residues within 4Å:- Chain E: D.182, Y.201, D.232, F.306, L.311, H.315, H.333
- Ligands: ZN.19, K.20
3 PLIP interactions:3 interactions with chain E- Water bridges: E:D.182, E:D.182, E:S.186
GOL.24: 9 residues within 4Å:- Chain E: K.162, A.165, L.170, S.172, S.187, Y.204, L.206, N.207, P.208
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:L.170, E:L.206
- Water bridges: E:L.206
GOL.27: 7 residues within 4Å:- Chain F: D.182, D.232, L.311, H.315, H.333
- Ligands: ZN.25, K.26
1 PLIP interactions:1 interactions with chain F- Water bridges: F:S.186
GOL.32: 9 residues within 4Å:- Chain G: D.182, Y.201, D.232, F.306, L.311, H.315, H.333
- Ligands: ZN.28, K.29
3 PLIP interactions:3 interactions with chain G- Water bridges: G:D.182, G:D.182, G:S.186
GOL.33: 9 residues within 4Å:- Chain G: K.162, A.165, L.170, S.172, S.187, Y.204, L.206, N.207, P.208
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:L.170, G:L.206
- Water bridges: G:L.206
GOL.36: 7 residues within 4Å:- Chain H: D.182, D.232, L.311, H.315, H.333
- Ligands: ZN.34, K.35
1 PLIP interactions:1 interactions with chain H- Water bridges: H:S.186
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mulichak, A.M., Crystal structure of glycerol dehydrogenase from Schyzosaccharomyces pombe. To be Published
- Release Date
- 2005-08-16
- Peptides
- glycerol dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 8 x ALA: ALANINE(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mulichak, A.M., Crystal structure of glycerol dehydrogenase from Schyzosaccharomyces pombe. To be Published
- Release Date
- 2005-08-16
- Peptides
- glycerol dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B