- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.8: 26 residues within 4Å:- Chain A: Y.25, S.26, Y.29, Y.30, P.35, V.37, E.38, D.39, Y.42, D.43, Y.87, S.88, L.89, D.91, E.118, L.119, K.120, I.121, A.125, R.141, E.175, Y.227, V.289, K.291, K.315
- Ligands: SO4.1
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:Y.29, A:Y.30, A:Y.42
- Hydrogen bonds: A:V.37, A:D.43, A:Y.87, A:L.89, A:L.119, A:I.121, A:R.141, A:Y.227, A:K.291, A:K.315, A:K.315
- Water bridges: A:G.70, A:G.70
- Salt bridges: A:K.120, A:K.120, A:R.141, A:K.315
- pi-Stacking: A:Y.29, A:Y.42, A:Y.227, A:Y.227
NAD.14: 25 residues within 4Å:- Chain B: Y.25, S.26, Y.29, Y.30, P.35, V.37, E.38, D.39, Y.42, D.43, Y.87, S.88, L.89, D.91, E.118, L.119, K.120, I.121, A.125, R.141, E.175, Y.227, V.289, K.291, K.315
28 PLIP interactions:28 interactions with chain B- Hydrophobic interactions: B:Y.29, B:Y.30, B:Y.42
- Hydrogen bonds: B:Y.30, B:V.37, B:D.39, B:D.43, B:Y.87, B:S.88, B:L.89, B:E.118, B:E.118, B:K.120, B:I.121, B:Y.227, B:K.291, B:K.315, B:K.315
- Water bridges: B:L.119, B:K.306, B:K.306
- Salt bridges: B:K.120, B:K.120, B:R.141, B:K.315
- pi-Stacking: B:Y.29, B:Y.42, B:Y.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gajiwala, K.S. et al., Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal. STRUCTURE (2004)
- Release Date
- 2004-11-23
- Peptides
- DNA ligase, NAD-dependent: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gajiwala, K.S. et al., Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal. STRUCTURE (2004)
- Release Date
- 2004-11-23
- Peptides
- DNA ligase, NAD-dependent: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
C