SMTL ID : 1tb3.2 (2 other biounits)

Crystal Structure Analysis of Recombinant Rat Kidney Long-chain Hydroxy Acid Oxidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 25 residues within 4Å: Chain A: F.23, I.24, S.75, P.76, T.77, A.78, S.105, Q.127, Y.129, T.155, K.223, S.245, H.247, G.248, R.250, D.278, G.279, G.280, R.282, L.300, G.301, R.302, P.303, L.305 Ligands: ACY.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.23, A:T.77, A:R.302, A:L.305 Hydrogen bonds: A:P.76, A:A.78, A:Q.127, A:Y.129, A:K.223, A:K.223, A:S.245, A:G.280, A:G.301, A:R.302 Water bridges: A:H.247, A:G.279, A:F.299, A:R.302, A:R.302 Salt bridges: A:R.282, A:R.302 pi-Cation interactions: A:R.250 FMN.3: 25 residues within 4Å: Chain B: F.23, I.24, S.75, P.76, T.77, A.78, S.105, Q.127, Y.129, T.155, K.223, S.245, H.247, G.248, R.250, D.278, G.279, G.280, R.282, L.300, G.301, R.302, P.303, L.305 Ligands: ACY.4 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:F.23, B:T.77, B:R.302, B:L.305 Hydrogen bonds: B:P.76, B:A.78, B:Q.127, B:T.155, B:K.223, B:K.223, B:S.245, B:G.280, B:G.301, B:R.302 Water bridges: B:H.247, B:V.281, B:V.281, B:R.302, B:R.302 Salt bridges: B:R.282, B:R.302 pi-Cation interactions: B:R.250 FMN.5: 25 residues within 4Å: Chain C: F.23, I.24, S.75, P.76, T.77, A.78, S.105, Q.127, Y.129, T.155, K.223, S.245, H.247, G.248, R.250, D.278, G.279, G.280, R.282, L.300, G.301, R.302, P.303, L.305 Ligands: ACY.6 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:F.23, C:T.77, C:R.302, C:L.305 Hydrogen bonds: C:P.76, C:A.78, C:Q.127, C:T.155, C:K.223, C:K.223, C:S.245, C:G.280, C:G.301, C:R.302 Water bridges: C:H.247, C:V.281, C:V.281, C:R.282, C:R.302 Salt bridges: C:R.282, C:R.302 pi-Cation interactions: C:R.250 FMN.7: 25 residues within 4Å: Chain D: F.23, I.24, S.75, P.76, T.77, A.78, S.105, Q.127, Y.129, T.155, K.223, S.245, H.247, G.248, R.250, D.278, G.279, G.280, R.282, L.300, G.301, R.302, P.303, L.305 Ligands: ACY.8 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:F.23, D:T.77, D:R.302, D:L.305 Hydrogen bonds: D:P.76, D:A.78, D:Q.127, D:Y.129, D:K.223, D:K.223, D:S.245, D:G.279, D:G.280, D:G.301, D:R.302 Water bridges: D:H.247, D:R.282, D:R.282, D:F.299, D:R.302 Salt bridges: D:R.282, D:R.302 pi-Cation interactions: D:R.250

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: Y.129, R.164, H.247, R.250 Ligands: FMN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.129 Salt bridges: A:R.164, A:H.247, A:R.250 ACY.4: 5 residues within 4Å: Chain B: Y.129, R.164, H.247, R.250 Ligands: FMN.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.129 Salt bridges: B:R.164, B:H.247, B:R.250 ACY.6: 5 residues within 4Å: Chain C: Y.129, R.164, H.247, R.250 Ligands: FMN.5 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.164, C:H.247, C:R.250 ACY.8: 5 residues within 4Å: Chain D: Y.129, R.164, H.247, R.250 Ligands: FMN.7 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Y.129 Salt bridges: D:R.164, D:H.247, D:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cunane, L.M. et al., Crystal Structure Analysis of Recombinant Rat Kidney Long Chain Hydroxy Acid Oxidase. Biochemistry (2005)

Release Date

2005-02-01

Peptides

Hydroxyacid oxidase 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Hydroxyacid oxidase 3

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