SMTL ID : 1tgz.2 (1 other biounit)

Structure of human Senp2 in complex with SUMO-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-oligomer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.29, F.30, K.31, R.33 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.29, A:F.30, A:K.31 Salt bridges: A:K.31, A:R.33 SO4.2: 2 residues within 4Å: Chain A: R.112, K.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.113 Water bridges: A:K.84, A:K.84 Salt bridges: A:R.112 SO4.3: 4 residues within 4Å: Chain A: K.125, K.129 Chain C: K.172, H.174 7 PLIP interactions: 2 interactions with chain C, 5 interactions with chain A Salt bridges: C:K.172, C:H.174, A:K.125, A:K.129 Water bridges: A:K.129, A:K.129, A:K.129 SO4.4: 4 residues within 4Å: Chain A: G.20, P.21, Q.22, D.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.22, A:D.23 SO4.5: 4 residues within 4Å: Chain A: R.33 Chain B: A.55, D.56, N.57 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.33 Hydrogen bonds: B:D.56, B:N.57, B:N.57 SO4.6: 4 residues within 4Å: Chain C: A.29, F.30, K.31, R.33 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.29, C:F.30, C:K.31 Salt bridges: C:K.31, C:R.33 SO4.7: 2 residues within 4Å: Chain C: R.112, K.113 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.113 Water bridges: C:K.84, C:K.84 Salt bridges: C:R.112 SO4.8: 4 residues within 4Å: Chain A: K.172, H.174 Chain C: K.125, K.129 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain A Water bridges: C:K.129, C:K.129, C:K.129 Salt bridges: C:K.125, C:K.129, A:K.172, A:H.174 SO4.9: 4 residues within 4Å: Chain C: G.20, P.21, Q.22, D.23 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.22, C:D.23 SO4.10: 4 residues within 4Å: Chain C: R.33 Chain D: A.55, D.56, N.57 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.56, D:N.57, D:N.57 Salt bridges: C:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reverter, D. et al., A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex. Structure (2004)

Release Date

2004-09-14

Peptides

Sentrin-specific protease 2: AC
Ubiquitin-like protein SMT3C: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Sentrin-specific protease 2

Ubiquitin-like protein SMT3C

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