SMTL ID : 1the.1

CRYSTAL STRUCTURES OF RECOMBINANT RAT CATHEPSIN B AND A CATHEPSIN B-INHIBITOR COMPLEX: IMPLICATIONS FOR STRUCTURE-BASED INHIBITOR DESIGN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x 0E6: amino{[(4S)-4-{[(benzyloxy)carbonyl]amino}-5-{[(2S)-1-(benzyloxy)-4-chloro-3-oxobutan-2-yl]amino}-5-oxopentyl]amino}met haniminium(Covalent)

0E6.1: 17 residues within 4Å: Chain A: Q.29, G.33, S.34, C.35, W.36, D.75, N.78, G.79, G.80, Y.81, P.82, A.179, V.182, M.202, G.204, H.205, E.251 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:D.75, A:V.182, A:V.182, A:M.202 Hydrogen bonds: A:Q.29, A:C.35, A:G.80, A:G.80, A:G.204 Water bridges: A:G.204, A:G.204 Salt bridges: A:E.251 0E6.2: 16 residues within 4Å: Chain B: Q.29, G.33, S.34, C.35, W.36, D.75, N.78, G.79, G.80, Y.81, P.82, E.128, V.182, G.204, H.205, E.251 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:D.75, B:V.182, B:V.182, B:H.205 Hydrogen bonds: B:Q.29, B:C.35, B:G.80, B:G.80, B:G.204 Water bridges: B:E.251, B:E.251 Salt bridges: B:E.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, Z. et al., Crystal structures of recombinant rat cathepsin B and a cathepsin B-inhibitor complex. Implications for structure-based inhibitor design. J.Biol.Chem. (1995)

Release Date

1996-03-10

Peptides

Cathepsin B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cathepsin B

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