SMTL ID : 1tjw.1

Crystal Structure of T161D Duck Delta 2 Crystallin Mutant with bound argininosuccinate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x AS1: ARGININOSUCCINATE(Non-covalent)

AS1.1: 10 residues within 4Å: Chain A: S.29, S.114, R.115, N.116, V.119, A.205, Y.323, Q.328, K.331 Chain C: H.162 15 PLIP interactions: 12 interactions with chain A, 1 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: A:R.115, A:V.119 Hydrogen bonds: A:S.29, A:R.115, A:N.116, A:Y.323, A:Q.328 Water bridges: A:N.116, A:K.325, A:K.325, A:K.331, D:N.291, C:D.161 Salt bridges: A:K.331, C:H.162 AS1.2: 10 residues within 4Å: Chain B: S.29, S.114, R.115, N.116, V.119, A.205, Y.323, Q.328, K.331 Chain D: H.162 18 PLIP interactions: 15 interactions with chain B, 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: B:V.119, B:V.119, B:Y.323 Hydrogen bonds: B:S.29, B:R.115, B:N.116, B:Y.323, B:Y.323, B:Q.328 Water bridges: B:S.29, B:D.33, B:D.89, B:N.116, B:K.331, D:D.161, C:N.291 Salt bridges: B:K.331, D:H.162 AS1.3: 10 residues within 4Å: Chain A: H.162 Chain C: S.29, S.114, R.115, N.116, V.119, A.205, Y.323, Q.328, K.331 18 PLIP interactions: 14 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: C:R.115, C:V.119, C:V.119 Hydrogen bonds: C:S.29, C:R.115, C:N.116, C:Y.323, C:Q.328 Water bridges: C:S.29, C:D.33, C:D.33, C:N.116, C:K.331, A:D.161, B:N.291, B:N.291 Salt bridges: C:K.331, A:H.162 AS1.4: 9 residues within 4Å: Chain B: H.162 Chain D: S.29, S.114, R.115, N.116, A.205, Y.323, Q.328, K.331 15 PLIP interactions: 12 interactions with chain D, 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: D:S.29, D:R.115, D:N.116, D:Y.323, D:Y.323, D:Q.328 Water bridges: D:N.116, D:K.325, D:K.325, D:K.331, D:K.331, B:D.161, A:N.291 Salt bridges: D:K.331, B:H.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sampaleanu, L.M. et al., Structural studies of duck delta2 crystallin mutants provide insight into the role of Thr161 and the 280s loop in catalysis. Biochem.J. (2004)

Release Date

2004-09-07

Peptides

Delta crystallin II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Delta crystallin II

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