SMTL ID : 1to3.1

Structure of yiht from Salmonella typhimurium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: K.184, R.215, H.219 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.184, A:R.215, A:H.219 PO4.2: 7 residues within 4Å: Chain A: Q.25, E.161, K.195, L.227, S.229, R.255 Ligands: PO4.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.25 Water bridges: A:D.24, A:D.24, A:D.24, A:E.161, A:E.161, A:E.161, A:K.195 Salt bridges: A:K.195, A:R.255 PO4.3: 11 residues within 4Å: Chain A: A.22, Q.25, K.195, L.227, S.228, S.229, L.252, A.253, G.254, R.255 Ligands: PO4.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.25, A:S.228, A:S.228, A:S.229, A:S.229, A:G.254, A:R.255 Salt bridges: A:K.195, A:R.255 PO4.13: 3 residues within 4Å: Chain B: K.184, R.215, H.219 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:K.184, B:R.215, B:H.219 PO4.14: 7 residues within 4Å: Chain B: Q.25, E.161, K.195, L.227, S.229, R.255 Ligands: PO4.15 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Q.25 Water bridges: B:D.24, B:D.24, B:D.24, B:E.161, B:E.161, B:E.161, B:K.195 Salt bridges: B:K.195, B:R.255 PO4.15: 11 residues within 4Å: Chain B: A.22, Q.25, K.195, L.227, S.228, S.229, L.252, A.253, G.254, R.255 Ligands: PO4.14 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.25, B:S.228, B:S.228, B:S.229, B:S.229, B:G.254, B:R.255 Salt bridges: B:K.195, B:R.255

18 x BR: BROMIDE ION(Non-covalent)

BR.4: 3 residues within 4Å: Chain A: K.203, G.204 Chain B: P.265 Ligand excluded by PLIP BR.5: 4 residues within 4Å: Chain A: I.101, P.102, V.103, R.165 Ligand excluded by PLIP BR.6: 3 residues within 4Å: Chain A: R.30, P.41, V.42 Ligand excluded by PLIP BR.7: 1 residues within 4Å: Chain A: D.174 Ligand excluded by PLIP BR.8: 3 residues within 4Å: Chain A: R.206, R.241, K.292 Ligand excluded by PLIP BR.9: 4 residues within 4Å: Chain A: D.49, F.50, N.53, T.267 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain A: D.266, T.267, E.268, L.269 Ligand excluded by PLIP BR.11: 4 residues within 4Å: Chain A: R.13, A.62, S.63 Ligands: BR.12 Ligand excluded by PLIP BR.12: 3 residues within 4Å: Chain A: R.13, A.14 Ligands: BR.11 Ligand excluded by PLIP BR.16: 3 residues within 4Å: Chain A: P.265 Chain B: K.203, G.204 Ligand excluded by PLIP BR.17: 4 residues within 4Å: Chain B: I.101, P.102, V.103, R.165 Ligand excluded by PLIP BR.18: 3 residues within 4Å: Chain B: R.30, P.41, V.42 Ligand excluded by PLIP BR.19: 1 residues within 4Å: Chain B: D.174 Ligand excluded by PLIP BR.20: 3 residues within 4Å: Chain B: R.206, R.241, K.292 Ligand excluded by PLIP BR.21: 4 residues within 4Å: Chain B: D.49, F.50, N.53, T.267 Ligand excluded by PLIP BR.22: 4 residues within 4Å: Chain B: D.266, T.267, E.268, L.269 Ligand excluded by PLIP BR.23: 4 residues within 4Å: Chain B: R.13, A.62, S.63 Ligands: BR.24 Ligand excluded by PLIP BR.24: 3 residues within 4Å: Chain B: R.13, A.14 Ligands: BR.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorman, J. et al., Structure of yiht from Salmonella typhimurium. To be Published

Release Date

2004-06-22

Peptides

Putative aldolase yihT: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative aldolase yihT