SMTL ID : 1tpz.2 (1 other biounit)

Crystal Structure of IIGP1: a paradigm for interferon inducible p47 resistance GTPases

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.83 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.83, H2O.4, H2O.6, H2O.7, H2O.8

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 18 residues within 4Å: Chain A: E.77, T.78, G.79, S.80, G.81, K.82, S.83, S.84, T.102, G.103, V.104, T.183, K.184, D.186, S.231, N.232, K.233 Ligands: MG.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:E.77, A:G.79, A:S.80, A:G.81, A:K.82, A:S.83, A:S.84, A:S.84, A:G.103, A:K.184, A:K.184, A:S.231, A:N.232, A:N.232, A:K.233 Water bridges: A:S.83 Salt bridges: A:K.82, A:D.186

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: H.116, N.118, V.261, S.262, L.263, N.265, K.274, T.318, V.319 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.118, A:N.265, A:K.274, A:K.274

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 6 residues within 4Å: Chain A: N.265, F.320, G.321, L.330, A.402, I.409 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.265, A:L.330, A:A.402, A:I.409 Hydrogen bonds: A:N.265 Water bridges: A:S.326, A:R.329, A:R.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A. et al., Crystal Structure of IIGP1; A Paradigm for Interferon-Inducible p47 Resistance GTPases. Mol.Cell (2004)

Release Date

2004-09-21

Peptides

interferon-inducible GTPase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

interferon-inducible GTPase

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