SMTL ID : 1tqf.1

Crystal structure of human Beta secretase complexed with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 32P: 3-{2-[(5-AMINOPENTYL)AMINO]-2-OXOETHOXY}-5-({[1-(4-FLUOROPHENYL)ETHYL]AMINO}CARBONYL)PHENYL PHENYLMETHANESULFONATE(Non-covalent)

32P.1: 23 residues within 4Å: Chain A: G.31, Q.32, G.33, Y.34, L.50, Y.91, T.92, Q.93, K.127, F.128, I.130, I.138, S.249, G.250, T.251, T.252, N.253, R.255, R.327, K.341, S.345, A.355, E.359 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.50, A:T.92, A:Q.93, A:I.138, A:A.355 Hydrogen bonds: A:T.92, A:Q.93, A:Q.93, A:G.250, A:G.250 Water bridges: A:T.251, A:T.252 Salt bridges: A:R.255 pi-Cation interactions: A:K.341 Halogen bonds: A:E.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coburn, C.A. et al., Identification of a small molecule nonpeptide active site beta-secretase inhibitor that displays a nontraditional binding mode for aspartyl proteases. J.Med.Chem. (2004)

Release Date

2004-11-09

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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