SMTL ID : 1tsq.1

CRYSTAL STRUCTURE OF AP2V SUBSTRATE VARIANT OF NC-P1 DECAMER PEPTIDE IN COMPLEX WITH V82A/D25N HIV-1 PROTEASE MUTANT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-1-mer

Ligands

10 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: R.14, K.70 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.14, A:K.70 ACT.2: 3 residues within 4Å: Chain A: K.20, E.21, N.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.21, A:E.21, A:N.83 Salt bridges: A:K.20 ACT.3: 2 residues within 4Å: Chain A: R.8 Chain B: R.87 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.8 Salt bridges: A:R.8, B:R.87 ACT.4: 2 residues within 4Å: Chain A: M.36, N.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.37 ACT.5: 2 residues within 4Å: Chain B: H.69, K.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.70 Salt bridges: B:H.69 ACT.6: 3 residues within 4Å: Chain A: F.99 Chain B: P.1, H.69 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.1 Hydrogen bonds: B:P.1, B:P.1 Salt bridges: B:H.69 ACT.7: 3 residues within 4Å: Chain B: W.42, K.55, R.57 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.42, B:R.57 Salt bridges: B:K.55 ACT.8: 1 residues within 4Å: Chain B: R.14 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.14 ACT.9: 3 residues within 4Å: Chain B: K.20, E.21, N.83 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.21, B:N.83 ACT.10: 2 residues within 4Å: Chain B: M.36, N.37 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.37 Water bridges: B:N.37 Salt bridges: B:K.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prabu-Jeyabalan, M. et al., Structural basis for coevolution of a human immunodeficiency virus type 1 nucleocapsid-p1 cleavage site with a V82A drug-resistant mutation in viral protease. J.Virol. (2004)

Release Date

2005-03-29

Peptides

Pol polyprotein: AB
AP2V NC-P1 SUBSTRATE PEPTIDE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

Pol polyprotein

AP2V NC-P1 SUBSTRATE PEPTIDE

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