SMTL ID : 1ttt.1 (2 other biounits)

Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain B: T.25, D.51, T.62 Ligands: GNP.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.25, B:D.51, B:T.62, H2O.1

1 x PHE: PHENYLALANINE(Non-covalent)

PHE.2: 11 residues within 4Å: Chain A: A.76 Chain B: H.67, E.226, T.239, E.271, M.272, H.273, R.274, N.285, V.286, G.287 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:H.67 Hydrogen bonds: B:H.273, B:R.274, B:N.285, B:N.285 pi-Stacking: B:H.67

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.4: 19 residues within 4Å: Chain B: V.20, D.21, H.22, G.23, K.24, T.25, T.26, Y.47, I.61, T.62, G.84, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:D.21, B:G.23, B:G.23, B:K.24, B:K.24, B:T.25, B:T.26, B:T.26, B:T.26, B:Y.47, B:T.62, B:G.84, B:N.136, B:K.137, B:K.137, B:S.174, B:A.175, B:L.176 Salt bridges: B:D.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nissen, P. et al., Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog. Science (1995)

Release Date

1996-12-23

Peptides

OF ELONGATION FACTOR TU (EF-TU): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

OF ELONGATION FACTOR TU (EF-TU)

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