SMTL ID : 1tu4.3 (9 other biounits)

Crystal Structure of Rab5-GDP Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 2 residues within 4Å: Chain A: S.21 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.21, H2O.1, H2O.1, H2O.1, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: E.15, S.16, A.17, V.18, G.19, K.20, S.21, S.22, E.67, N.120, K.121, D.123, L.124, S.150, A.151, K.152 Ligands: CO.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.17, A:V.18, A:G.19, A:K.20, A:S.21, A:S.22, A:S.22, A:E.67, A:N.120, A:K.121, A:K.121, A:S.150, A:A.151, A:K.152 Salt bridges: A:K.20, A:D.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, G. et al., Structural basis of Rab5-Rabaptin5 interaction in endocytosis. Nat.Struct.Mol.Biol. (2004)

Release Date

2004-10-05

Peptides

Ras-related protein Rab-5A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Ras-related protein Rab-5A

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