SMTL ID : 1tu5.1

Crystal structure of bovine plasma copper-containing amine oxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-NAG.1: 7 residues within 4Å: Chain A: L.62, F.113, Q.116, N.120, T.122, V.140, P.146 No protein-ligand interaction detected (PLIP) NAG-NAG-NAG.2: 7 residues within 4Å: Chain B: F.113, Q.116, N.120, T.122, D.137, V.140, P.146 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: K.190, L.192, N.215 Chain B: L.431 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.192 Hydrogen bonds: A:K.190, A:N.215 NAG.4: 3 residues within 4Å: Chain A: T.554, E.556, N.649 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.554 NAG.9: 2 residues within 4Å: Chain B: E.556, N.649 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.556

2 x CU: COPPER (II) ION(Non-covalent)

CU.5: 3 residues within 4Å: Chain A: H.503, H.505, H.667 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.503, A:H.505, A:H.667, H2O.1 CU.10: 4 residues within 4Å: Chain B: Y.454, H.503, H.505, H.667 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.503, B:H.505, B:H.667, H2O.9, H2O.9

4 x CA: CALCIUM ION(Non-covalent)

CA.6: 6 residues within 4Å: Chain A: K.89, D.512, L.513, D.514, D.656, L.657 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.512, A:L.513, A:D.514, A:D.656, A:L.657, H2O.2 CA.7: 4 residues within 4Å: Chain A: E.555, F.646, N.648, E.650 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.555, A:F.646, A:E.650, H2O.2, H2O.3 CA.11: 6 residues within 4Å: Chain B: K.89, D.512, L.513, D.514, D.656, L.657 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.512, B:L.513, B:D.514, B:D.656, B:L.657, H2O.12 CA.12: 4 residues within 4Å: Chain B: E.555, F.646, N.648, E.650 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.555, B:F.646, B:E.650, H2O.10, H2O.13

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 4 residues within 4Å: Chain A: N.465, A.467, R.689 Chain B: V.680 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain B: N.465, A.467, R.689, P.690 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain A: I.542, Q.543 Chain B: R.366, M.598, S.602 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lunelli, M. et al., Crystal structure of amine oxidase from bovine serum. J.Mol.Biol. (2005)

Release Date

2005-02-22

Peptides

Copper amine oxidase, liver isozyme: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Copper amine oxidase, liver isozyme

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