SMTL ID : 1tuf.2 (1 other biounit)

Crystal structure of Diaminopimelate Decarboxylase from m. jannaschi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x AZ1: AZELAIC ACID(Non-covalent)

AZ1.1: 12 residues within 4Å: Chain A: K.69, H.210, G.212, S.213, R.293, R.329, Y.333, Y.387 Chain B: C.358, E.359, S.360, Y.395 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.387 Water bridges: A:R.329 Salt bridges: A:H.210, A:R.293, A:R.329 Hydrogen bonds: B:C.358, B:S.360 AZ1.2: 9 residues within 4Å: Chain A: C.358, E.359, S.360 Chain B: K.69, S.213, R.293, R.329, Y.333, Y.387 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.333, B:Y.333, B:Y.387 Salt bridges: B:H.210, B:R.293, B:R.329 Hydrogen bonds: A:C.358, A:S.360 AZ1.3: 12 residues within 4Å: Chain C: K.69, H.210, G.212, S.213, R.293, R.329, Y.333, Y.387 Chain D: C.358, E.359, S.360, Y.395 7 PLIP interactions: 2 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:C.358, D:S.360 Hydrophobic interactions: C:Y.387 Water bridges: C:R.329 Salt bridges: C:H.210, C:R.293, C:R.329 AZ1.4: 9 residues within 4Å: Chain C: C.358, E.359, S.360 Chain D: K.69, S.213, R.293, R.329, Y.333, Y.387 8 PLIP interactions: 2 interactions with chain C, 6 interactions with chain D Hydrogen bonds: C:C.358, C:S.360 Hydrophobic interactions: D:Y.333, D:Y.333, D:Y.387 Salt bridges: D:H.210, D:R.293, D:R.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajashankar, K. et al., Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure (2002)

Release Date

2004-07-20

Peptides

Diaminopimelate decarboxylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Diaminopimelate decarboxylase

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