SMTL ID : 1tuy.1

Acetate Kinase complexed with ADP, AlF3 and acetate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.91, H.123, H.180, N.211, G.212, R.241 Ligands: ADP.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.211, A:G.212 Salt bridges: A:R.91, A:H.123, A:H.180, A:R.241

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 11 residues within 4Å: Chain A: K.14, G.210, N.211, D.283, F.284, R.285, G.331, I.332, N.335, S.336 Ligands: SO4.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.211, A:D.283, A:D.283, A:F.284, A:R.285, A:G.331, A:N.335 Water bridges: A:N.211 Salt bridges: A:K.14 pi-Cation interactions: A:R.285, A:R.285 ADP.3: 13 residues within 4Å: Chain B: L.209, G.210, N.211, D.283, F.284, R.285, A.330, G.331, I.332, N.335, S.336, R.362 Ligands: AF3.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.209, B:N.211, B:F.284, B:G.331, B:N.335 Water bridges: B:N.282

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.4: 4 residues within 4Å: Chain B: H.180, G.212 Ligands: ADP.3, ACY.5 No protein-ligand interaction detected (PLIP)

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 6 residues within 4Å: Chain B: V.93, H.94, H.123, P.232, R.241 Ligands: AF3.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.93, B:P.232 Salt bridges: B:H.94, B:H.123, B:R.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorrell, A. et al., Structural and Kinetic Analyses of Arginine Residues in the Active Site of the Acetate Kinase from Methanosarcina thermophila. J.Biol.Chem. (2005)

Release Date

2005-01-11

Peptides

Acetate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acetate kinase

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