- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.08 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x C2N: 3-chloro-D-alanine(Non-covalent)
C2N.2: 13 residues within 4Å:- Chain A: K.51, I.73, G.74, S.78, N.79, Q.80, W.102, A.160, G.161, Y.268, Y.294
- Ligands: PLP.1, NAK.3
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:K.51, A:N.79, A:N.79, A:Q.80, A:G.161, A:Y.268, A:Y.294
- Water bridges: A:S.78, A:Y.268
- Salt bridges: A:K.51
C2N.7: 13 residues within 4Å:- Chain C: K.51, G.74, G.75, S.78, N.79, Q.80, W.102, G.161, T.199, Y.268, Y.294
- Ligands: PLP.6, NAK.8
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:K.51, C:N.79, C:N.79, C:Q.80, C:Y.268, C:Y.268, C:Y.294
- Water bridges: C:S.78
- Salt bridges: C:K.51
- 2 x NAK: AMINO-ACRYLATE(Non-covalent)
NAK.3: 8 residues within 4Å:- Chain A: K.51, S.78, N.79, Q.80, T.199, Y.294
- Ligands: PLP.1, C2N.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:T.199
- Hydrogen bonds: A:N.79, A:Q.80, A:Y.294
- Water bridges: A:G.75, A:S.78
- Salt bridges: A:K.51
NAK.8: 9 residues within 4Å:- Chain C: K.51, S.78, N.79, Q.80, G.161, T.199, Y.294
- Ligands: PLP.6, C2N.7
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:T.199
- Hydrogen bonds: C:N.79, C:Q.80, C:G.161
- Water bridges: C:S.78
- Salt bridges: C:K.51
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 8 residues within 4Å:- Chain B: K.51, S.78, N.79, Q.80, T.199, Y.268, Y.294
- Ligands: PLP.5
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.78, B:N.79, B:N.79, B:Q.80
- Water bridges: B:G.161, B:G.161
- Salt bridges: B:K.51
SO4.9: 7 residues within 4Å:- Chain D: K.51, S.78, N.79, Q.80, Y.268, Y.294
- Ligands: PLP.10
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:S.78, D:N.79, D:Q.80, D:Y.268, D:Y.294
- Water bridges: D:G.75, D:G.161
- Salt bridges: D:K.51
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karthikeyan, S. et al., Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction. Biochemistry (2004)
- Release Date
- 2004-11-02
- Peptides
- 1-aminocyclopropane-1-carboxylate deaminase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.08 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x C2N: 3-chloro-D-alanine(Non-covalent)
- 2 x NAK: AMINO-ACRYLATE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karthikeyan, S. et al., Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction. Biochemistry (2004)
- Release Date
- 2004-11-02
- Peptides
- 1-aminocyclopropane-1-carboxylate deaminase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D