SMTL ID : 1u08.1

Crystal Structure and Reactivity of YbdL from Escherichia coli Identify a Methionine Aminotransferase Function.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 14 residues within 4Å: Chain A: G.99, A.100, T.101, Y.125, Y.128, N.170, N.174, D.202, V.204, Y.205, S.233, K.236, K.244 Chain B: Y.63 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.125, A:Y.125, A:N.174, A:V.204, A:Y.205 Hydrogen bonds: A:A.100, A:T.101, A:T.101, A:N.174, A:Y.205, A:S.233, A:S.233, A:K.236 Water bridges: A:G.235 Salt bridges: A:K.244 pi-Stacking: A:Y.125 PLP.2: 15 residues within 4Å: Chain A: Y.63 Chain B: G.99, A.100, T.101, L.104, Y.125, Y.128, N.170, N.174, D.202, V.204, Y.205, S.233, K.236, K.244 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.125, B:N.174 Hydrogen bonds: B:A.100, B:T.101, B:T.101, B:N.174, B:Y.205, B:S.233, B:S.233, A:Y.63 Water bridges: B:E.102, B:G.235 Salt bridges: B:K.244 pi-Stacking: B:Y.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolzan, M. et al., Crystal structure and reactivity of YbdL from Escherichia coli identify a methionine aminotransferase function. FEBS Lett. (2004)

Release Date

2004-07-27

Peptides

Hypothetical aminotransferase ybdL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical aminotransferase ybdL