SMTL ID : 1u0e.1

Crystal structure of mouse phosphoglucose isomerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.160, S.210, K.211, T.212, T.215 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.160, A:S.210, A:K.211, A:T.212, A:T.215 Water bridges: A:G.159, A:S.160, A:S.160 SO4.2: 5 residues within 4Å: Chain A: A.2, A.3, R.6, S.367, A.369 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.2, A:A.2, A:S.367 Water bridges: A:A.3, A:A.3 SO4.3: 2 residues within 4Å: Chain A: N.47, H.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.47 Salt bridges: A:H.48 SO4.4: 2 residues within 4Å: Chain A: R.106, S.298 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.106, A:R.106 Salt bridges: A:R.106 SO4.15: 3 residues within 4Å: Chain B: R.137, G.289, D.291 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.137, B:F.290, B:F.290 Salt bridges: B:R.137 SO4.16: 2 residues within 4Å: Chain B: A.369, R.370 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.370 Water bridges: B:G.368 Salt bridges: B:R.370 SO4.17: 6 residues within 4Å: Chain B: G.158, G.159, G.272, R.273, Q.354, E.358 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.159, B:Q.354 Water bridges: B:G.272, B:E.358, B:E.358 SO4.18: 2 residues within 4Å: Chain B: K.147, S.148 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.148 Salt bridges: B:K.142 SO4.19: 3 residues within 4Å: Chain B: T.212, T.214, T.215 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.212, B:T.214 Water bridges: B:T.215, B:K.519, B:K.519 Salt bridges: B:K.519 SO4.20: 3 residues within 4Å: Chain B: G.531, S.532, S.533 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.533, B:S.533, B:S.533 Water bridges: B:G.531, B:G.531, B:G.531, B:G.531, B:S.532, B:S.532

5 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 5 residues within 4Å: Chain A: G.419, H.422, K.423, L.426 Chain B: R.553 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.553 BME.6: 4 residues within 4Å: Chain A: L.165, R.347 Chain B: Q.343 Ligands: GOL.12 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.347 BME.7: 4 residues within 4Å: Chain A: H.50 Chain B: Q.551, Q.552, T.555 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.552 BME.8: 2 residues within 4Å: Chain A: T.150, R.180 No protein-ligand interaction detected (PLIP) BME.9: 4 residues within 4Å: Chain A: L.196, A.197, L.199, W.228 No protein-ligand interaction detected (PLIP)

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 5 residues within 4Å: Chain A: R.135, D.140, W.141, K.142, K.241 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.135, A:D.140, A:K.142, A:K.142, A:K.241 GOL.11: 4 residues within 4Å: Chain A: K.400, M.401, N.471, R.472 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.400, A:N.471 Water bridges: A:I.402, A:R.472 GOL.12: 4 residues within 4Å: Chain A: E.169, F.183, H.346 Ligands: BME.6 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.183, A:F.183 GOL.13: 7 residues within 4Å: Chain A: K.128, F.132, W.141, V.244, Q.261, N.262, L.264 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.262 Water bridges: A:K.128 GOL.14: 4 residues within 4Å: Chain A: K.172, R.180, V.181, H.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.181, A:V.181 GOL.21: 3 residues within 4Å: Chain B: P.8, Q.9, S.74 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.9 Water bridges: B:S.74 GOL.22: 5 residues within 4Å: Chain B: N.39, F.40, Y.55, K.62, M.65 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.55, B:Y.55 Water bridges: B:M.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graham Solomons, J.T. et al., The crystal structure of mouse phosphoglucose isomerase at 1.6A resolution and its complex with glucose 6-phosphate reveals the catalytic mechanism of sugar ring opening. J.Mol.Biol. (2004)

Release Date

2004-11-02

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-6-phosphate isomerase

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