SMTL ID : 1u11.1 (1 other biounit)

PurE (N5-carboxyaminoimidazole Ribonucleotide Mutase) from the acidophile Acetobacter aceti

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-octamer

Ligands

8 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 11 residues within 4Å: Chain A: G.29, S.30, S.32, D.33, S.57, H.59, R.60, A.84, G.85, A.87 Chain F: P.125 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:G.29, A:S.30, A:S.57, A:S.57, A:G.85 Water bridges: A:R.60, A:R.60, A:R.60 Salt bridges: A:H.59, A:R.60 Hydrophobic interactions: F:P.125 CIT.2: 11 residues within 4Å: Chain B: G.29, S.30, S.32, D.33, S.57, H.59, A.84, G.85, A.87, A.88 Chain G: P.125 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain G Hydrogen bonds: B:G.29, B:G.85 Water bridges: B:H.59, B:R.60, B:H.89, B:H.89, G:G.126 Salt bridges: B:H.59, B:R.60 Hydrophobic interactions: G:P.125 CIT.3: 11 residues within 4Å: Chain C: G.29, S.30, S.32, D.33, S.57, H.59, R.60, A.84, G.85, A.87 Chain H: P.125 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain H Hydrogen bonds: C:G.29, C:S.30, C:S.57, C:S.57, C:G.85 Water bridges: C:R.60, C:R.60, C:R.60 Salt bridges: C:H.59, C:R.60 Hydrophobic interactions: H:P.125 CIT.4: 11 residues within 4Å: Chain D: G.29, S.30, S.32, D.33, S.57, H.59, A.84, G.85, A.87, A.88 Chain E: P.125 10 PLIP interactions: 2 interactions with chain E, 8 interactions with chain D Hydrophobic interactions: E:P.125 Water bridges: E:G.126, D:H.59, D:R.60, D:H.89, D:H.89 Hydrogen bonds: D:G.29, D:G.85 Salt bridges: D:H.59, D:R.60 CIT.5: 11 residues within 4Å: Chain D: P.125 Chain E: G.29, S.30, S.32, D.33, S.57, H.59, R.60, A.84, G.85, A.87 11 PLIP interactions: 1 interactions with chain D, 10 interactions with chain E Hydrophobic interactions: D:P.125 Hydrogen bonds: E:G.29, E:S.30, E:S.57, E:S.57, E:G.85 Water bridges: E:R.60, E:R.60, E:R.60 Salt bridges: E:H.59, E:R.60 CIT.6: 11 residues within 4Å: Chain A: P.125 Chain F: G.29, S.30, S.32, D.33, S.57, H.59, A.84, G.85, A.87, A.88 10 PLIP interactions: 8 interactions with chain F, 2 interactions with chain A Hydrogen bonds: F:G.29, F:G.85 Water bridges: F:H.59, F:R.60, F:H.89, F:H.89, A:G.126 Salt bridges: F:H.59, F:R.60 Hydrophobic interactions: A:P.125 CIT.7: 11 residues within 4Å: Chain B: P.125 Chain G: G.29, S.30, S.32, D.33, S.57, H.59, R.60, A.84, G.85, A.87 11 PLIP interactions: 10 interactions with chain G, 1 interactions with chain B Hydrogen bonds: G:G.29, G:S.30, G:S.57, G:S.57, G:G.85 Water bridges: G:R.60, G:R.60, G:R.60 Salt bridges: G:H.59, G:R.60 Hydrophobic interactions: B:P.125 CIT.8: 11 residues within 4Å: Chain C: P.125 Chain H: G.29, S.30, S.32, D.33, S.57, H.59, A.84, G.85, A.87, A.88 10 PLIP interactions: 8 interactions with chain H, 2 interactions with chain C Hydrogen bonds: H:G.29, H:G.85 Water bridges: H:H.59, H:R.60, H:H.89, H:H.89, C:G.126 Salt bridges: H:H.59, H:R.60 Hydrophobic interactions: C:P.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Settembre, E.C. et al., Acidophilic adaptations in the structure of Acetobacter aceti N5-carboxyaminoimidazole ribonucleotide mutase (PurE). Acta Crystallogr.,Sect.D (2004)

Release Date

2004-09-28

Peptides

PurE (N5-carboxyaminoimidazole Ribonucleotide Mutase): ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

PurE (N5-carboxyaminoimidazole Ribonucleotide Mutase)

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