SMTL ID : 1u16.1

Crystal structure of a duck-delta-crystallin-1 double loop mutant (DLM) in complex with sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: T.159, H.160 Chain B: N.114 Chain D: S.281, M.284, K.287, N.289 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 3 interactions with chain D Hydrogen bonds: B:N.114, D:N.289 Water bridges: B:R.113, D:S.282 Salt bridges: A:H.160, D:K.287 SO4.6: 7 residues within 4Å: Chain A: N.114 Chain B: T.159, H.160 Chain C: S.281, M.284, K.287, N.289 6 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 3 interactions with chain C Salt bridges: B:H.160, C:K.287 Hydrogen bonds: A:N.114, C:N.289 Water bridges: A:R.113, C:S.282 SO4.11: 7 residues within 4Å: Chain B: S.281, M.284, K.287, N.289 Chain C: T.159, H.160 Chain D: N.114 7 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: B:N.289, D:N.114, C:T.159 Water bridges: B:S.282, D:R.113 Salt bridges: B:K.287, C:H.160 SO4.16: 7 residues within 4Å: Chain A: S.281, M.284, K.287, N.289 Chain C: N.114 Chain D: T.159, H.160 7 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: A:N.289, C:N.114, D:T.159 Water bridges: A:S.282, C:R.113 Salt bridges: A:K.287, D:H.160

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.414, S.421 Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: K.357, E.358 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: K.414, S.421 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: K.357, E.358 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain C: K.414, S.421 Ligand excluded by PLIP CL.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain C: K.357, E.358 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain D: K.414, S.421 Ligand excluded by PLIP CL.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain D: K.357, E.358 Ligand excluded by PLIP

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.5: 3 residues within 4Å: Chain A: K.69, E.98, L.99 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.95 Salt bridges: A:K.69 MES.10: 3 residues within 4Å: Chain B: K.69, E.98, L.99 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.95 Salt bridges: B:K.69 MES.15: 3 residues within 4Å: Chain C: K.69, E.98, L.99 2 PLIP interactions: 2 interactions with chain C Water bridges: C:R.95 Salt bridges: C:K.69 MES.20: 3 residues within 4Å: Chain D: K.69, E.98, L.99 2 PLIP interactions: 2 interactions with chain D Water bridges: D:R.95 Salt bridges: D:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsai, M. et al., A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity. Biochemistry (2004)

Release Date

2004-10-05

Peptides

Delta crystallin I: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Delta crystallin I

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