- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: E.52, I.72, S.76
- Chain B: E.52, I.72, S.76
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Metal complexes: B:E.52, B:I.72, B:S.76, A:E.52, A:I.72
K.7: 6 residues within 4Å:- Chain C: E.52, I.72, S.76
- Chain D: E.52, I.72, S.76
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Metal complexes: C:I.72, C:S.76, D:I.72
K.12: 6 residues within 4Å:- Chain E: E.52, I.72, S.76
- Chain F: E.52, I.72, S.76
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain E- Metal complexes: F:E.52, F:I.72, F:S.76, E:E.52, E:I.72
- 6 x 182: 1-((2-HYDROXYETHOXY)METHYL)-5-(PHENYLSELANYL)PYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)
182.3: 17 residues within 4Å:- Chain A: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, E.230, P.232
- Chain B: F.10, H.11, R.51
- Ligands: PO4.1
9 PLIP interactions:2 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:H.11, A:Q.169, A:Q.169, A:R.171, A:R.171
- pi-Stacking: B:F.10, A:F.165
- Hydrophobic interactions: A:I.223
- Water bridges: A:R.94
182.5: 17 residues within 4Å:- Chain A: F.10, H.11
- Chain B: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230, P.232
- Ligands: PO4.4
11 PLIP interactions:4 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:H.11, B:T.97, B:Q.169, B:Q.169, B:R.171, B:R.171
- Water bridges: A:R.51, A:R.51
- pi-Stacking: A:F.10, B:F.165
- Hydrophobic interactions: B:V.224
182.8: 15 residues within 4Å:- Chain C: T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, P.232
- Chain D: F.10, H.11
- Ligands: PO4.6
13 PLIP interactions:9 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:I.223, C:V.224, C:P.232
- Hydrogen bonds: C:T.97, C:Q.169, C:Q.169, C:R.171, C:R.171, D:H.11
- pi-Stacking: C:F.165, D:F.10
- Water bridges: D:R.51, D:R.51
182.10: 15 residues within 4Å:- Chain C: F.10, H.11
- Chain D: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224
- Ligands: PO4.9
10 PLIP interactions:8 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:I.223, D:V.224
- Hydrogen bonds: D:T.97, D:Q.169, D:Q.169, D:R.171, D:R.171, C:H.11
- pi-Stacking: D:F.165, C:F.10
182.13: 14 residues within 4Å:- Chain E: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223
- Chain F: F.10, H.11
- Ligands: PO4.11
11 PLIP interactions:7 interactions with chain E, 4 interactions with chain F- Hydrophobic interactions: E:I.223
- Hydrogen bonds: E:Q.169, E:Q.169, E:R.171, E:R.171, F:H.11
- Water bridges: E:R.94, F:R.51, F:R.51
- pi-Stacking: E:F.165, F:F.10
182.15: 16 residues within 4Å:- Chain E: F.10, H.11
- Chain F: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, E.230, P.232
- Ligands: PO4.14
12 PLIP interactions:7 interactions with chain F, 5 interactions with chain E- Hydrophobic interactions: F:I.223, F:P.232
- Hydrogen bonds: F:Q.169, F:Q.169, F:R.171, F:R.171, E:H.11
- pi-Stacking: F:F.165, E:F.10
- Water bridges: E:R.51, E:R.51, E:R.51
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bu, W. et al., Structural basis for inhibition of Escherichia coli uridine phosphorylase by 5-substituted acyclouridines. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-07-05
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x K: POTASSIUM ION(Non-covalent)
- 6 x 182: 1-((2-HYDROXYETHOXY)METHYL)-5-(PHENYLSELANYL)PYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bu, W. et al., Structural basis for inhibition of Escherichia coli uridine phosphorylase by 5-substituted acyclouridines. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-07-05
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F