SMTL ID : 1u4b.1

Extension of an adenine-8oxoguanine mismatch

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 9 residues within 4Å: Chain C: E.29, N.30, Y.31, D.76, R.79, L.99, D.112, I.309, N.311 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.79, C:D.112, C:N.311, C:N.311, C:A.313, C:E.29, C:R.79 Water bridges: C:D.76, C:R.79, C:Q.312, C:T.323, C:T.323

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain C: H.386, R.406, K.410 3 PLIP interactions: 3 interactions with chain C Water bridges: C:Q.360 Salt bridges: C:R.406, C:K.410 SO4.3: 1 residues within 4Å: Chain C: R.523 2 PLIP interactions: 2 interactions with chain C Water bridges: C:R.523 Salt bridges: C:R.523 SO4.4: 4 residues within 4Å: Chain C: A.2, M.3, A.4, R.47 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.4 Salt bridges: C:R.47 SO4.5: 3 residues within 4Å: Chain C: R.10, T.12, E.13 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.13 Salt bridges: C:R.10

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain C: D.357, Y.358, D.534 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.357, C:Y.358, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, G.W. et al., Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase. Nature (2004)

Release Date

2004-09-14

Peptides

DNA polymerase I: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase I

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