SMTL ID : 1u8a.1

Crystal Structure of Mycobacterium Tuberculosis Shikimate Kinase in Complex with Shikimate and ADP at 2.15 Angstrom Resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.66 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: V.28, G.29, H.72, G.74 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.66, A.90, A.91 Ligand excluded by PLIP

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 13 residues within 4Å: Chain A: L.10, P.11, G.12, S.13, G.14, K.15, S.16, T.17, R.110, R.117, R.153, N.154, P.155 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:S.16, A:T.17, A:T.17, A:T.17, A:R.110, A:R.153 Water bridges: A:K.15, A:K.15, A:S.16, A:S.16, A:S.16, A:D.32, A:R.110, A:R.117, A:T.150 Salt bridges: A:K.15, A:R.117 pi-Cation interactions: A:R.110, A:R.110

1 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.5: 12 residues within 4Å: Chain A: P.11, D.34, I.45, F.49, F.57, R.58, G.79, G.80, G.81, P.118, L.119, R.136 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.49 Hydrogen bonds: A:D.34, A:E.61, A:G.80 Water bridges: A:D.34, A:E.61, A:G.79, A:G.81 Salt bridges: A:R.58, A:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dhaliwal, B. et al., Crystallographic studies of shikimate binding and induced conformational changes in Mycobacterium tuberculosis shikimate kinase. Febs Lett. (2004)

Release Date

2004-10-19

Peptides

Shikimate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Shikimate kinase

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