SMTL ID : 1u8f.1

Crystal Structure Of Human Placental Glyceraldehyde-3-Phosphate Dehydrogenase At 1.75 Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

3 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain B: N.9, G.10, F.11, G.12, R.13, I.14, N.34, D.35, P.36, F.37, I.38, E.79, R.80, S.98, T.99, G.100, F.102, S.122, A.123, C.152, A.183, N.316, E.317, Y.320 Chain C: P.191 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:I.14, B:Y.320 Hydrogen bonds: B:N.9, B:F.11, B:R.13, B:I.14, B:N.34, B:R.80, B:N.316 Water bridges: B:F.11, B:G.12, B:G.15, B:R.16, B:G.100, B:S.122, B:A.183, B:A.183, B:E.317 pi-Stacking: B:F.37 NAD.2: 24 residues within 4Å: Chain C: N.9, G.10, F.11, G.12, R.13, I.14, N.34, D.35, P.36, F.37, I.38, E.79, R.80, S.98, T.99, G.100, F.102, S.122, A.123, C.152, A.183, N.316, E.317, Y.320 18 PLIP interactions: 17 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:I.14, C:Y.320 Hydrogen bonds: C:N.9, C:F.11, C:R.13, C:I.14, C:N.34, C:R.80, C:N.316 Water bridges: C:F.11, C:G.12, C:G.15, C:G.100, C:S.122, C:A.183, C:A.183, B:D.189 pi-Stacking: C:F.37 NAD.3: 25 residues within 4Å: Chain A: P.191 Chain D: N.9, G.10, F.11, G.12, R.13, I.14, N.34, D.35, P.36, F.37, I.38, E.79, R.80, S.98, T.99, G.100, F.102, S.122, A.123, C.152, A.183, N.316, E.317, Y.320 18 PLIP interactions: 17 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:I.14, D:Y.320 Hydrogen bonds: D:N.9, D:F.11, D:R.13, D:I.14, D:N.34, D:R.80, D:N.316 Water bridges: D:F.11, D:G.12, D:G.15, D:G.100, D:S.122, D:E.317, D:E.317, A:D.189 pi-Stacking: D:F.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenkins, J.L. et al., High-resolution structure of human D-glyceraldehyde-3-phosphate dehydrogenase. Acta Crystallogr.,Sect.D (2006)

Release Date

2005-08-16

Peptides

Glyceraldehyde-3-phosphate dehydrogenase, liver: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

C
Q

D
R

Glyceraldehyde-3-phosphate dehydrogenase, liver

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