SMTL ID : 1u8k.1

Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide LELDKWASL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

hetero-oligomer

Ligands

1 x LEU- GLU- LEU- ASP- LYS- TRP- ALA- SER- LEU: GP41 PEPTIDE(Non-covalent)

LEU-GLU-LEU-ASP-LYS-TRP-ALA-SER-LEU.1: 14 residues within 4Å: Chain A: L.91, H.92, F.93, Y.94, P.95, H.96 Chain B: G.33, Y.54, D.56, D.58, R.100, P.103, R.113, V.116 18 PLIP interactions: 9 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:P.103, B:R.113, B:V.116, A:F.93, A:Y.94 Hydrogen bonds: B:D.56, B:D.58, B:R.60, B:R.113, A:H.92, A:Y.94, A:Y.94, A:Y.94, A:Y.94 Water bridges: B:R.113, A:L.91 Salt bridges: B:R.100, A:H.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bryson, S. et al., Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptides and Peptide Mimetics. To be Published

Release Date

2004-10-05

Peptides

ANTIBODY 2F5 (LIGHT CHAIN): A
ANTIBODY 2F5 (HEAVY CHAIN): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ANTIBODY 2F5 (LIGHT CHAIN)

ANTIBODY 2F5 (HEAVY CHAIN)