- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x R5P: RIBOSE-5-PHOSPHATE(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.3: 8 residues within 4Å:- Chain A: R.92, Q.93, D.94, F.97, H.125
- Chain B: F.32, D.34, E.36
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:D.34, A:R.92
- Water bridges: B:D.34, A:Y.90
- pi-Stacking: B:F.32, B:F.32
- Salt bridges: A:H.125
- pi-Cation interactions: A:R.92
AMP.4: 8 residues within 4Å:- Chain A: F.32, D.34, E.36
- Chain B: R.92, Q.93, D.94, F.97, H.125
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.92, A:D.34
- Water bridges: B:Y.90
- Salt bridges: B:H.125
- pi-Cation interactions: B:R.92
- pi-Stacking: A:F.32, A:F.32
AMP.6: 8 residues within 4Å:- Chain C: F.32, D.34, E.36
- Chain D: R.92, Q.93, D.94, F.97, H.125
10 PLIP interactions:4 interactions with chain C, 6 interactions with chain D- Hydrogen bonds: C:D.34, C:E.36, D:R.92, D:D.94
- pi-Stacking: C:F.32, C:F.32
- Water bridges: D:Y.90, D:N.98
- Salt bridges: D:H.125
- pi-Cation interactions: D:R.92
AMP.8: 8 residues within 4Å:- Chain C: R.92, Q.93, D.94, F.97, H.125
- Chain D: F.32, D.34, E.36
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:R.92, C:D.94, D:D.34
- Water bridges: C:Y.90
- Salt bridges: C:H.125
- pi-Cation interactions: C:R.92
- pi-Stacking: D:F.32, D:F.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kadziola, A. et al., Novel class III phosphoribosyl diphosphate synthase: structure and properties of the tetrameric, phosphate-activated, non-allosterically inhibited enzyme from Methanocaldococcus jannaschii. J.Mol.Biol. (2005)
- Release Date
- 2005-08-23
- Peptides
- Ribose-phosphate pyrophosphokinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x R5P: RIBOSE-5-PHOSPHATE(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kadziola, A. et al., Novel class III phosphoribosyl diphosphate synthase: structure and properties of the tetrameric, phosphate-activated, non-allosterically inhibited enzyme from Methanocaldococcus jannaschii. J.Mol.Biol. (2005)
- Release Date
- 2005-08-23
- Peptides
- Ribose-phosphate pyrophosphokinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D