SMTL ID : 1ua0.1

Aminofluorene DNA adduct at the pre-insertion site of a DNA polymerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 11 residues within 4Å: Chain C: E.29, N.30, Y.31, D.76, R.79, L.99, D.112, I.309, N.311, A.313, T.323 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.79, C:D.112, C:N.311, C:N.311, C:A.313, C:R.79 Water bridges: C:D.76, C:R.79, C:D.112, C:Q.312, C:D.112, C:D.112

1 x AF: 2-AMINOFLUORENE(Non-covalent)

AF.2: 11 residues within 4Å: Chain B: T.3, G.4 Chain C: Q.408, A.411, V.412, G.415, I.420, L.425, A.436, F.439, I.440 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:A.411, C:V.412, C:I.420, C:L.425, C:F.439, C:F.439, C:I.440

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain C: A.2, M.3, A.4, R.47 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.4 Salt bridges: C:R.47 SO4.4: 1 residues within 4Å: Chain C: R.523 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.523, C:R.523 Salt bridges: C:R.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, G.W. et al., Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase. J.Biol.Chem. (2004)

Release Date

2004-09-28

Peptides

DNA polymerase I: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase I

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