SMTL ID : 1ua1.1

Structure of aminofluorene adduct paired opposite cytosine at the polymerase active site.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x AF: 2-AMINOFLUORENE(Non-covalent)

AF.1: 7 residues within 4Å: Chain B: T.3, G.4 Chain C: I.420, S.421, G.424, Q.427, N.428 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.420

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain C: H.386, R.406, K.410 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.406, C:K.410 SO4.3: 4 residues within 4Å: Chain C: A.2, M.3, A.4, R.47 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.4 Salt bridges: C:R.47 SO4.4: 1 residues within 4Å: Chain C: R.483 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.483

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, G.W. et al., Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase. J.Biol.Chem. (2004)

Release Date

2004-09-28

Peptides

DNA polymerase I: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase I

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