SMTL ID : 1uas.1

Crystal structure of rice alpha-galactosidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x GLA: alpha-D-galactopyranose(Non-covalent)

GLA.1: 13 residues within 4Å: Chain A: W.16, D.51, D.52, Y.93, C.101, S.102, K.128, D.130, C.162, W.164, R.181, D.185, M.217 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.52, A:D.52, A:Y.93, A:K.128, A:K.128, A:W.164, A:R.181, A:R.181, A:D.185 Water bridges: A:D.185, A:D.216

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.183, G.184, R.196, E.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.184, A:E.199 Salt bridges: A:R.196

1 x PT: PLATINUM (II) ION(Non-covalent)

PT.3: 3 residues within 4Å: Chain A: M.140, W.172, M.176 No protein-ligand interaction detected (PLIP)

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: S.98, L.109, D.110, A.135, R.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.110, A:R.137 Water bridges: A:L.109 GOL.5: 4 residues within 4Å: Chain A: Y.57, S.98, Q.99, P.106 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.97, A:Q.99, A:G.107 GOL.6: 3 residues within 4Å: Chain A: W.190, T.194, R.306 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.194, A:T.194, A:R.306 Water bridges: A:R.306 GOL.7: 8 residues within 4Å: Chain A: P.169, A.170, T.171, W.172, A.173, G.174, W.180, Y.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.172, A:G.174 GOL.8: 4 residues within 4Å: Chain A: S.226, E.229, P.351, H.352 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.226, A:S.226, A:P.351 GOL.9: 5 residues within 4Å: Chain A: D.110, H.111, E.112, E.113, R.145 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.112, A:E.112, A:E.113, A:R.145 Water bridges: A:E.113, A:Q.114, A:R.145 GOL.10: 9 residues within 4Å: Chain A: G.6, T.8, P.9, Q.10, M.11, G.44, Q.46, Y.47, Q.271 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.9, A:M.11 Water bridges: A:G.6, A:R.7, A:G.44, A:Q.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, Z. et al., Crystal structure of rice alpha-galactosidase complexed with D-galactose. J.Biol.Chem. (2003)

Release Date

2003-07-01

Peptides

alpha-galactosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alpha-galactosidase